View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19095_low_11 (Length: 359)
Name: NF19095_low_11
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 2 - 342
Target Start/End: Complemental strand, 26276068 - 26275728
Alignment:
| Q |
2 |
agaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctgcccagaaac |
101 |
Q |
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| T |
26276068 |
agaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctgcccagaaac |
26275969 |
T |
|
| Q |
102 |
gcagaagctttggcagaggttgtgtactgggattgaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgttggtaattggagcaaac |
201 |
Q |
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| T |
26275968 |
gcagaagctttggcagaggttgtgtactgggattgaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgttggtaattgaagcaaac |
26275869 |
T |
|
| Q |
202 |
aggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttcaataataatgcgcattcgatgga |
301 |
Q |
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| T |
26275868 |
aggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttcaataataatgcgcattcgatgga |
26275769 |
T |
|
| Q |
302 |
acatctgtttcggagtgttattgtggaagtaggctgtagct |
342 |
Q |
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| T |
26275768 |
acatctgtttcggagtgttattgtggaagtaggctgtagct |
26275728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 39397955 - 39397830
Alignment:
| Q |
180 |
tgtgttggtaattggagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttca |
279 |
Q |
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| T |
39397955 |
tgtgttggtaattggagcaaagcggtgcagcaagtcttaatagcagcggttctgcacacggtttggaagatttagatagaacgtaatgagcgttatttca |
39397856 |
T |
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| Q |
280 |
ataataatgcgcattcgatggaacat |
305 |
Q |
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||||||| ||| ||||| |||||||| |
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| T |
39397855 |
ataataaggcgaattcgttggaacat |
39397830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 43673469 - 43673411
Alignment:
| Q |
43 |
tgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctgcccagaaac |
101 |
Q |
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| T |
43673469 |
tgtttctgtcatcaacatgaagaaacctccagtcatattttcttcagctgcccagaaac |
43673411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 23893197 - 23893301
Alignment:
| Q |
180 |
tgtgttggtaattggagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttca |
279 |
Q |
| |
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||||||||||||||||||||| ||| ||||| || || ||||||||||||||||||| | |||| || ||| ||||| |||||||| | ||||||| |
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| T |
23893197 |
tgtgttggtaattggagcaaagcggtgcagcaagtcttaatagcagcagttctgcacacagtttggaagatttgaatagatcgtaatgagcgttatttca |
23893296 |
T |
|
| Q |
280 |
ataat |
284 |
Q |
| |
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||||| |
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| T |
23893297 |
ataat |
23893301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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