View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19095_low_12 (Length: 346)
Name: NF19095_low_12
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 20707019 - 20706699
Alignment:
| Q |
18 |
aaagatataatatctacgtggcttgaattggattttgatacatgtgtaaaaataatttcagatttgaattgcaataatcatggtgcaaaatcccttnnnn |
117 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
20707019 |
aaagatataatatctacgtggcttgatttggatttagatacatgtgtaaaaata-tttcagattttaattgcaataatcatggtgcaaaatcccttaaaa |
20706921 |
T |
|
| Q |
118 |
nnnnnntcacagtgcaataataataaaaaagtgatctggtaaatcttgattcataatttactnnnnnnnnnnnnngaaagtaatttcttatcaataaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||| |
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| T |
20706920 |
aaaaaatcacagtgcaataataataaaaaagtgatctggtaaatcctgattcataatttcctaaaaataaaaaaagaaagtaatttctgatcaataaaaa |
20706821 |
T |
|
| Q |
218 |
ggtgatatggta----aatcccggatatcagtcgaggttcccatcattcattgattcattccttaaactttggagttttactgtttggaggttagagcat |
313 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20706820 |
ggtgatatggtaggtaaatcccggatatgagtcgaggttcccatcattcattgattcattccttaaacttgggagttttactgtttggaggttagagcat |
20706721 |
T |
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| Q |
314 |
actaactaccactagtacctat |
335 |
Q |
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|||||||||||||||||||||| |
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| T |
20706720 |
actaactaccactagtacctat |
20706699 |
T |
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