View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19095_low_16 (Length: 309)

Name: NF19095_low_16
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19095_low_16
NF19095_low_16
[»] chr6 (3 HSPs)
chr6 (16-309)||(7563956-7564251)
chr6 (237-272)||(34625743-34625778)
chr6 (224-272)||(6294538-6294586)
[»] chr5 (3 HSPs)
chr5 (225-271)||(28322251-28322297)
chr5 (225-272)||(9895156-9895203)
chr5 (237-272)||(40878405-40878440)
[»] chr4 (5 HSPs)
chr4 (226-272)||(9906783-9906829)
chr4 (237-272)||(32369927-32369962)
chr4 (225-271)||(18783987-18784033)
chr4 (230-267)||(27857943-27857980)
chr4 (240-272)||(12710012-12710044)
[»] chr8 (7 HSPs)
chr8 (235-272)||(2506191-2506228)
chr8 (224-272)||(3508061-3508109)
chr8 (240-272)||(10170404-10170436)
chr8 (237-272)||(29096955-29096990)
chr8 (225-272)||(33697144-33697191)
chr8 (240-272)||(2517116-2517148)
chr8 (240-272)||(34768337-34768369)
[»] chr3 (2 HSPs)
chr3 (237-272)||(36302002-36302037)
chr3 (237-272)||(49636841-49636876)
[»] chr2 (3 HSPs)
chr2 (237-272)||(5461184-5461219)
chr2 (230-272)||(15098113-15098155)
chr2 (237-271)||(32102875-32102909)
[»] chr7 (3 HSPs)
chr7 (230-272)||(23948401-23948443)
chr7 (240-272)||(28266483-28266515)
chr7 (228-272)||(32855363-32855407)
[»] chr1 (1 HSPs)
chr1 (237-275)||(3148156-3148194)


Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 7563956 - 7564251
Alignment:
Q  16 attttcccaagtaacaatgacaaaaa-ctacaagaagtgtatttaaagctaagaggcaaagggaacaat-ggagaggaacactgtgttagatgatgttat 113  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7563956 attttcccaagtaacaatgacaaaaaactacaagaagtgtatttaaagctaagaggcaaagggaacaattggagaggaacactgtgttagatgatgttat 7564055  T
Q  114 gtcgataggcaatgaccgacttaaccaaatagacggtgttatggttattggcttggcatgtcttgtgtaacacatgaactaggtaaccaagatagttctc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7564056 gtcgataggcaatgaccgacttaaccaaatagacggtgttatggttattggcttggcatgtcttgtgtaacacatgaaccaggtaaccaagatagttctc 7564155  T
Q  214 aaattaggtagcaccaacacgtatgattacattcaattaatttattttctcaaattatttctcgaatggacaagtcggtgtcgtgtttgtgcttca 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7564156 aaattaggtagcaccaacacgtatgattacattcaattaatttattttctcaaattatttctcgaatggacaagttagtgtcgtgtttgtgcttca 7564251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 34625778 - 34625743
Alignment:
Q  237 tgattacattcaattaatttattttctcaaattatt 272  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34625778 tgattacattcaattaattcattttctcaaattatt 34625743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 6294538 - 6294586
Alignment:
Q  224 gcaccaacacgtatgattacattcaattaatttattttctcaaattatt 272  Q
    |||||||||| |  |||| ||||||||||||| ||||||||||||||||    
T  6294538 gcaccaacacatgcgattgcattcaattaattcattttctcaaattatt 6294586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 28322297 - 28322251
Alignment:
Q  225 caccaacacgtatgattacattcaattaatttattttctcaaattat 271  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||    
T  28322297 caccaacacatgtgattacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 9895203 - 9895156
Alignment:
Q  225 caccaacacgtatgattacattcaattaatttattttctcaaattatt 272  Q
    ||||||||| | ||||||| ||||| ||||||||||||||||||||||    
T  9895203 caccaacacatgtgattacgttcaaataatttattttctcaaattatt 9895156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 40878405 - 40878440
Alignment:
Q  237 tgattacattcaattaatttattttctcaaattatt 272  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40878405 tgattacattcaattaatttagtttctcaaattatt 40878440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 9906829 - 9906783
Alignment:
Q  226 accaacacgtatgattacattcaattaatttattttctcaaattatt 272  Q
    |||||||  |||||||||||||||||||||||||||||| |||||||    
T  9906829 accaacatatatgattacattcaattaatttattttctctaattatt 9906783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 32369927 - 32369962
Alignment:
Q  237 tgattacattcaattaatttattttctcaaattatt 272  Q
    ||||||||||||||||||| ||||||||||||||||    
T  32369927 tgattacattcaattaattcattttctcaaattatt 32369962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 18784033 - 18783987
Alignment:
Q  225 caccaacacgtatgattacattcaattaatttattttctcaaattat 271  Q
    ||||||||||| | |||||||||||||| || |||||||||||||||    
T  18784033 caccaacacgtgtaattacattcaattacttcattttctcaaattat 18783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 27857943 - 27857980
Alignment:
Q  230 acacgtatgattacattcaattaatttattttctcaaa 267  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  27857943 acacgtgtgattacattcaattaattaattttctcaaa 27857980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 12710044 - 12710012
Alignment:
Q  240 ttacattcaattaatttattttctcaaattatt 272  Q
    |||| ||||||||||||||||||||||||||||    
T  12710044 ttacgttcaattaatttattttctcaaattatt 12710012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 2506228 - 2506191
Alignment:
Q  235 tatgattacattcaattaatttattttctcaaattatt 272  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2506228 tatgattacattcaattaatttattttctctaattatt 2506191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 3508109 - 3508061
Alignment:
Q  224 gcaccaacacgtatgattacattcaattaatttattttctcaaattatt 272  Q
    |||||||||| |||||||||||| |||||  ||||||||||||||||||    
T  3508109 gcaccaacacatatgattacattgaattatgttattttctcaaattatt 3508061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 10170404 - 10170436
Alignment:
Q  240 ttacattcaattaatttattttctcaaattatt 272  Q
    |||||||||||||||||||||||||||||||||    
T  10170404 ttacattcaattaatttattttctcaaattatt 10170436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 29096990 - 29096955
Alignment:
Q  237 tgattacattcaattaatttattttctcaaattatt 272  Q
    ||||||||||||||||||||||||||| ||||||||    
T  29096990 tgattacattcaattaatttattttcttaaattatt 29096955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 33697144 - 33697191
Alignment:
Q  225 caccaacacgtatgattacattcaattaatttattttctcaaattatt 272  Q
    |||| ||||||||| ||| ||||||||| |||||||||||||||||||    
T  33697144 caccgacacgtatggttatattcaattattttattttctcaaattatt 33697191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 2517148 - 2517116
Alignment:
Q  240 ttacattcaattaatttattttctcaaattatt 272  Q
    |||||||||||||||| ||||||||||||||||    
T  2517148 ttacattcaattaattcattttctcaaattatt 2517116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 34768337 - 34768369
Alignment:
Q  240 ttacattcaattaatttattttctcaaattatt 272  Q
    |||||||||||||||||||||||||||| ||||    
T  34768337 ttacattcaattaatttattttctcaaactatt 34768369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 36302037 - 36302002
Alignment:
Q  237 tgattacattcaattaatttattttctcaaattatt 272  Q
    ||||||||||||||||||||||||||||| ||||||    
T  36302037 tgattacattcaattaatttattttctcacattatt 36302002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 49636841 - 49636876
Alignment:
Q  237 tgattacattcaattaatttattttctcaaattatt 272  Q
    ||||||||||||||||||| ||||||||||||||||    
T  49636841 tgattacattcaattaattcattttctcaaattatt 49636876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 5461184 - 5461219
Alignment:
Q  237 tgattacattcaattaatttattttctcaaattatt 272  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5461184 tgattacattcaattaatttattatctcaaattatt 5461219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 15098113 - 15098155
Alignment:
Q  230 acacgtatgattacattcaattaatttattttctcaaattatt 272  Q
    |||| ||| |||||||||||||||||| |||||||||||||||    
T  15098113 acacttataattacattcaattaattttttttctcaaattatt 15098155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 32102875 - 32102909
Alignment:
Q  237 tgattacattcaattaatttattttctcaaattat 271  Q
    |||||| ||||||||||||||||||||||||||||    
T  32102875 tgattatattcaattaatttattttctcaaattat 32102909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 23948443 - 23948401
Alignment:
Q  230 acacgtatgattacattcaattaatttattttctcaaattatt 272  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||    
T  23948443 acacatatgattacattcaattaattgattttttcaaattatt 23948401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 28266515 - 28266483
Alignment:
Q  240 ttacattcaattaatttattttctcaaattatt 272  Q
    |||||| ||||||||||||||||||||||||||    
T  28266515 ttacatccaattaatttattttctcaaattatt 28266483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 32855407 - 32855363
Alignment:
Q  228 caacacgtatgattacattcaattaatttattttctcaaattatt 272  Q
    |||||| ||||||||||||||||||| | ||||||| ||||||||    
T  32855407 caacacatatgattacattcaattaaatcattttcttaaattatt 32855363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 3148194 - 3148156
Alignment:
Q  237 tgattacattcaattaatttattttctcaaattatttct 275  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  3148194 tgattatattaaattaatttattttctcaaattatttct 3148156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University