View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19095_low_18 (Length: 268)

Name: NF19095_low_18
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19095_low_18
NF19095_low_18
[»] chr5 (18 HSPs)
chr5 (18-240)||(30339521-30339740)
chr5 (18-240)||(30059245-30059464)
chr5 (49-240)||(30748531-30748719)
chr5 (18-241)||(30398952-30399172)
chr5 (52-236)||(30434714-30434895)
chr5 (19-241)||(29852186-29852405)
chr5 (52-240)||(30243402-30243587)
chr5 (50-246)||(30482286-30482479)
chr5 (52-240)||(29871074-29871259)
chr5 (61-240)||(30678210-30678386)
chr5 (50-153)||(4380630-4380733)
chr5 (51-154)||(30205481-30205584)
chr5 (27-137)||(30474363-30474473)
chr5 (54-156)||(30203119-30203221)
chr5 (56-155)||(29709943-29710042)
chr5 (51-90)||(30714463-30714502)
chr5 (186-239)||(30205399-30205452)
chr5 (51-139)||(30429934-30430022)
[»] chr4 (2 HSPs)
chr4 (18-237)||(20297599-20297818)
chr4 (186-239)||(20303720-20303773)
[»] chr7 (1 HSPs)
chr7 (18-240)||(26706220-26706439)
[»] chr1 (3 HSPs)
chr1 (18-139)||(7098401-7098522)
chr1 (18-90)||(7582724-7582796)
chr1 (186-239)||(7582889-7582942)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 30339521 - 30339740
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    |||||||||||||||||  |||||||||    ||||||||||| |||||||||||||||||||||||||||||  ||||  |||  | | ||||||||||    
T  30339521 gtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccatgtcttccatctcttaaagacctctatgttgagggatgtaacaat 30339620  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  |||||||   |||||||||||||||||||| |||||||||||    
T  30339621 gagttactgaggtcaatctctaccttccgtggtcttactcagcttatcttatatgaaggtgaagg---aataacatccttcccagaggggatgttcaaaa 30339717  T
Q  218 accttacttctcttcaatctctg 240  Q
    |||||||||||||||||||||||    
T  30339718 accttacttctcttcaatctctg 30339740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 30059464 - 30059245
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    |||||||||||||||||  |||   |||  ||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||    
T  30059464 gtttccttgtctttctaagttggatatctctgaatgccgtaaacttggactgccatgtcttccatctcttaaatccctcactgtatcggaatgtaacaat 30059365  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || || |||   ||||||||   ||||||||||||||||||| |||||||||||    
T  30059364 gagttactgaggtcaatctctaccttccgtggtcttactcagcttttcgtaaatgggggtgaagga---ataacatccttcccagaggggatgttcaaaa 30059268  T
Q  218 accttacttctcttcaatctctg 240  Q
    |||||||||||||||||||||||    
T  30059267 accttacttctcttcaatctctg 30059245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 49 - 240
Target Start/End: Complemental strand, 30748719 - 30748531
Alignment:
Q  49 gattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtg 148  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||  | |||  |||||||||||||||||||||||||||||||||||||||||||    
T  30748719 gattgccctgaacttggactgccatgtcttccatctcttaaatccctccatttatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtg 30748620  T
Q  149 gtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 240  Q
    |||||||| |||||| |||| ||    |||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30748619 gtcttactcagcttaccctaaatagtggtgaagg---aataacatccttaccagaggagatgttcaaaaaccttacttctcttcaatctctg 30748531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 30399172 - 30398952
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    ||||||||||||||||   |||| |||||  | |||||||||||||||| |||||||||||||||||||||||| ||||  |||||  | ||||||||||    
T  30399172 gtttccttgtctttctgagttgagaatcacagcttgccctaaacttggagtgccatgtcttccatctcttaaatccctctatgtattgggatgtaacaat 30399073  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||| || || ||  |||   |||||||||||||||||||| |||||||||||    
T  30399072 gagttactgaggtcaatctctaccttccgtggtcttactgagctttccctagattacggtagagg---aataacatccttcccagaggggatgttcaaaa 30398976  T
Q  218 accttacttctcttcaatctctgg 241  Q
    ||||||||||||||||||| ||||    
T  30398975 accttacttctcttcaatcactgg 30398952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 52 - 236
Target Start/End: Complemental strand, 30434895 - 30434714
Alignment:
Q  52 tgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 151  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| |||  ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  30434895 tgccctaaacttggactgccatgtcttccatctcttaaagacctcggtgtcgatggacgtaacaatgagttactgaggtcaatctctaccttccgtggtc 30434796  T
Q  152 ttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatc 236  Q
    ||||| |||||| |||| ||    |||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30434795 ttactcagcttaccctaaatagtggtgaagg---aataacatccttaccagaggagatgttcaaaaaccttacttctcttcaatc 30434714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 29852405 - 29852186
Alignment:
Q  19 tttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatg 118  Q
    |||||||||||||||| ||||| ||||    |||||||| |||||||||||||||||||||||||||| ||| | |||  |||||  | |||||||||||    
T  29852405 tttccttgtctttctaatttgaaaatctcatattgccctgaacttggactgccatgtcttccatctctgaaactgctccatgtattgggatgtaacaatg 29852306  T
Q  119 agttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaa 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||| ||      | |||||||||||||||||||||||||||||||||    
T  29852305 agttactgaggtcaatctctaccttccgtggtcttacaaagctttggctacatgacggt---ttcagaataacatccttcccagaggagatgttcaaaaa 29852209  T
Q  219 ccttacttctcttcaatctctgg 241  Q
    |||||||||||||||||||||||    
T  29852208 ccttacttctcttcaatctctgg 29852186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 30243402 - 30243587
Alignment:
Q  52 tgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 151  Q
    |||||||||||||||||||||||||||||||||||||||  ||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  30243402 tgccctaaacttggactgccatgtcttccatctcttaaagacctctttgtatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 30243501  T
Q  152 ttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 240  Q
    ||||| ||||||  |||  | || ||   ||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30243502 ttactcagcttaaactaattcacggtttcgg---aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30243587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 50 - 246
Target Start/End: Complemental strand, 30482479 - 30482286
Alignment:
Q  50 attgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtgg 149  Q
    |||||| ||||||||||||||||| ||||||||||||| ||  ||||  |||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  30482479 attgccataaacttggactgccatctcttccatctcttgaaggcctctatgtggatggatgtaacaatgagttactgaggtcaatctctaccttccgtgg 30482380  T
Q  150 tcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctggaagta 246  Q
    ||||||| |||||| ||||   ||  |||||||   |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||    
T  30482379 tcttactcagcttaccctaatggagggtgaagg---aataacatccttcccagaggggatgttcaaaaaccttacttgtcttcaatatctggaagta 30482286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 52 - 240
Target Start/End: Complemental strand, 29871259 - 29871074
Alignment:
Q  52 tgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 151  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||| ||   ||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  29871259 tgccctaaaattggactgccatgtcttccatctcttaaagacctcgttgccgatccatgtaacaatgagttactgaggtcaatctctaccttttgtggtc 29871160  T
Q  152 ttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 240  Q
    ||||| |||||  ||||  |||| ||||||||   ||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  29871159 ttactcagcttgccctaagtgacggtgaagga---ataacatccttcccagaggggatgttcaaaaaccttacttctcttctatctctg 29871074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 61 - 240
Target Start/End: Original strand, 30678210 - 30678386
Alignment:
Q  61 cttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactaagc 160  Q
    ||||||||||||||||||||||||||||||   ||||   |||  | ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30678210 cttggactgccatgtcttccatctcttaaagaactcgagatatggggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagc 30678309  T
Q  161 ttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 240  Q
    ||  ||||||| || ||   ||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30678310 tttccctatataacggtttcgg---aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 4380733 - 4380630
Alignment:
Q  50 attgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtgg 149  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||| |||  | | |||||||||||||||||||||||||||||||||||| |||||    
T  4380733 attgccctaaacttggactgccatgtcatccatctcttaaacacctcgttgttgagggatgtaacaatgagttactgaggtcaatctctacctttcgtgg 4380634  T
Q  150 tctt 153  Q
    ||||    
T  4380633 tctt 4380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 30205584 - 30205481
Alignment:
Q  51 ttgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggt 150  Q
    ||||||||||||||||||||||||||||  ||||||||||  ||| | |||||  | ||||||||||||||| |||||||||||||||| |||  |||||    
T  30205584 ttgccctaaacttggactgccatgtcttgtatctcttaaaaacctagatgtattgggatgtaacaatgagttgctgaggtcaatctctagcttttgtggt 30205485  T
Q  151 ctta 154  Q
    ||||    
T  30205484 ctta 30205481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 30474473 - 30474363
Alignment:
Q  27 tctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactg 126  Q
    |||||||| |||||| || |||||||||||||||||||   ||||||| |||||||| ||||||  ||||  ||||| || |||||||||||||||||||    
T  30474473 tctttctaatttgaccattattgattgccctaaacttgtgttgccatgccttccatcccttaaagacctcattgtatttggatgtaacaatgagttactg 30474374  T
Q  127 aggtcaatctc 137  Q
    || ||||||||    
T  30474373 agatcaatctc 30474363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 30203221 - 30203119
Alignment:
Q  54 ccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtctt 153  Q
    ||||||||||  |||| |||||||||||| | |||||  |||   |||| |||||||||||||||||||||||||||| ||||||| ||||  |||||||    
T  30203221 ccctaaacttcaactgtcatgtcttccatatgttaaaaacctttatgtaaatgaatgtaacaatgagttactgaggtcgatctctagcttctatggtctt 30203122  T
Q  154 act 156  Q
    |||    
T  30203121 act 30203119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 29709943 - 29710042
Alignment:
Q  56 ctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 155  Q
    ||||||||| |||| |||||||||| ||||||| |  ||||| ||| |  | ||||||||||||||||||||| |||||||||||||   ||||||||||    
T  29709943 ctaaacttgaactgtcatgtcttccgtctcttatagacctcgatgtttcgggatgtaacaatgagttactgagatcaatctctacctcatgtggtcttac 29710042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 30714463 - 30714502
Alignment:
Q  51 ttgccctaaacttggactgccatgtcttccatctcttaaa 90  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30714463 ttgccctaaacttggactgccatgtcttccatctcttaaa 30714502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 30205452 - 30205399
Alignment:
Q  186 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctct 239  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||||| ||||    
T  30205452 aataacatccttcccggacgggatgttcaaaaaccttacttgtcttcaagctct 30205399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 30430022 - 30429934
Alignment:
Q  51 ttgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctcta 139  Q
    ||||| |||||||||  ||||||| ||| ||||| |||||   |||  |||| ||| |||||||||||||||||||  |||||||||||    
T  30430022 ttgccttaaacttgggttgccatgcctttcatcttttaaagaactcattgtagatggatgtaacaatgagttactggagtcaatctcta 30429934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 20297599 - 20297818
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    |||||||||||||||||  |||| ||||    | ||||||||||||||| |||||||||||||||||||||||| ||||| |||  ||  ||||||||||    
T  20297599 gtttccttgtctttctaagttgaaaatctccaaatgccctaaacttggaatgccatgtcttccatctcttaaatccctcgatgtcgatccatgtaacaat 20297698  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||||  ||||  |||| |||||| ||||||||||||||||||||| | |||||||||||    
T  20297699 gagttactgagatcaatctctactttccgtggtcttactcagctttccctacttgacagtgaagaaataataacatccttcccagatgggatgttcaaaa 20297798  T
Q  218 accttacttctcttcaatct 237  Q
    ||||||||||||||||||||    
T  20297799 accttacttctcttcaatct 20297818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 20303720 - 20303773
Alignment:
Q  186 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctct 239  Q
    |||||||||||||| | ||| |||||||| ||||||||||| ||||||| ||||    
T  20303720 aataacatccttccaaaaggggatgttcataaaccttacttgtcttcaaactct 20303773  T

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Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 26706439 - 26706220
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    ||||||||||||||||  |||||||||     |||||||||| || |||||||||||||||||||||||||||| ||||  ||| |  | ||||||||||    
T  26706439 gtttccttgtctttctcgtttgacaatatactattgccctaagctaggactgccatgtcttccatctcttaaatccctcaatgtttcgggatgtaacaat 26706340  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||| ||||||| || | |||||   |||||||||||||||||||| |||||||||||    
T  26706339 gagttactgaggtcaatccctacctttcgtggtcttactgagcttaccctatataacggcgaagg---aataacatccttcccagaggggatgttcaaaa 26706243  T
Q  218 accttacttctcttcaatctctg 240  Q
    |||||||||||||||||||||||    
T  26706242 accttacttctcttcaatctctg 26706220  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 7098522 - 7098401
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    ||||||||||||||||| ||||  ||||    ||||||||||||||| ||| || |||||||||||| ||| |  ||||  |||| |||||||||| |||    
T  7098522 gtttccttgtctttctattttggaaatcgacaattgccctaaacttgaacttccgtgtcttccatctgttagagacctctatgtagatgaatgtaataat 7098423  T
Q  118 gagttactgaggtcaatctcta 139  Q
     || | |||| |||||||||||    
T  7098422 aagatgctgaagtcaatctcta 7098401  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 7582724 - 7582796
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaa 90  Q
    ||||||||||||||||| |||||  ||||   ||||||||||||||| ||| || |||||||||||| |||||    
T  7582724 gtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgttaaa 7582796  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 7582889 - 7582942
Alignment:
Q  186 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctct 239  Q
    |||||||||||||||| ||||||||||   ||||||||||| ||| ||||||||    
T  7582889 aataacatccttcccaaaggagatgtttggaaaccttacttgtctccaatctct 7582942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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