View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19095_low_2 (Length: 708)
Name: NF19095_low_2
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 42031603 - 42031532
Alignment:
| Q |
143 |
tgatgtactaatataaaaatgaaaatatccattctcatatttccattctagagaaatgttctgtaacacaag |
214 |
Q |
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| T |
42031603 |
tgatgtactaatataaaaatgaaaacatccattctcatatttccattctagagaaatgttctgtaacacaag |
42031532 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 42031728 - 42031670
Alignment:
| Q |
19 |
aagacgtcaagcaagtaaaaacaccttcaaagaaaccaccttatgtcgaagtaaatccg |
77 |
Q |
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| T |
42031728 |
aagacgtcaagcaagtaaagacaccttcaaagaaaccgtcttatgtcaaagtaaatccg |
42031670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 397
Target Start/End: Complemental strand, 27911003 - 27910902
Alignment:
| Q |
296 |
tagaatcaattcacctagatgcaaaagctacaaggagttgcttatgctaaaatcaattctagacttcagaatcgatttcccattaagagatccaaacatc |
395 |
Q |
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|||||||||||||| ||| ||| ||||| |||||||| |||| | ||||||||||||||| ||||| |||| |||| || || ||||| ||||||||| |
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| T |
27911003 |
tagaatcaattcacgaagacgcagaagctccaaggagtagcttctagtaaaatcaattctaggcttcataatcaattttcccttcagagacccaaacatc |
27910904 |
T |
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| Q |
396 |
at |
397 |
Q |
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|| |
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| T |
27910903 |
at |
27910902 |
T |
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