View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19095_low_23 (Length: 237)
Name: NF19095_low_23
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 47648851 - 47649053
Alignment:
| Q |
20 |
atagaataagtttgggtagatgctaaagtcatcaattatatgttaatagaccctgagatatgggaaaattttggactactcctaacctaagggaataata |
119 |
Q |
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| T |
47648851 |
atagaataagtttgggtagatgctaaagtcatcaattatatgttaatagaccctgagatatgggaaaattttggactactcctaacctaaggg-ataata |
47648949 |
T |
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| Q |
120 |
tgtagaaacggaggttcgtggaagtctatgacgaatgtaaca-ttgtttttgtctactaattatcctaagtcaattatttaattttgtttttatcctgat |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47648950 |
tgtagaaacggagtttcgtggaagtctatgacgaatgtaacatttttttttgtctactaattatcctaagtcaattatttaattttgtttttatcctgat |
47649049 |
T |
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| Q |
219 |
ttct |
222 |
Q |
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|||| |
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| T |
47649050 |
ttct |
47649053 |
T |
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