View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19095_low_5 (Length: 621)
Name: NF19095_low_5
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 5705498 - 5706102
Alignment:
| Q |
1 |
ttgttctgcacttgcaaaattaggaaagtataaagcgcgagggttccagctcaaaacctgaggaacacaaatcgaagttacatttgagtctcaaagctca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5705498 |
ttgttctgcacttgcaaaattaggaaagtataaagcgcgagggttccagctcaaaacctgaggaacacaaatcaaagttacatttgagtctcaaagctca |
5705597 |
T |
|
| Q |
101 |
aatcaatcatgaagtagaatcatgagctcaatatcgatcctattcaagtaacactgaaaataataaatttgagatttataatcatttgcataaaaaatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5705598 |
aatcaatcatgaagtagaatcatgagctcaatatcgatcctattcaagtaacactgaaaataataaatttgagatttataatcatttgcataaaaaatct |
5705697 |
T |
|
| Q |
201 |
acgaaatcaaaatctgtgatgtcaatcgcggatcgcataaataaaagaggtttgactaaattccgctatgtggtattgctatagagttactaaatagtgt |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5705698 |
acgaaatcaaaatctgtgatgttaatcgcggatcgcataaataaaagaggtttgactaaattccgctatgtggtaatgctatagagttactaaatagtgt |
5705797 |
T |
|
| Q |
301 |
atcccaaaataataacaatttattcaaattttgctacgctataccaatgtagcgctactataggcgctatttaccaatcctaatcaatatttatgaagca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5705798 |
atcccaaaataataacaatttattcaaattttgctacgctataccaatgtagcgccactataggcgctatttaccaatcctaatcaatatttatgaagca |
5705897 |
T |
|
| Q |
401 |
ccaacacgcggacaccggacacaacactggctcgacaacaccgatgattatttgaaaacaaatgacataattgaatgtaatcatgcatgcgagtgttgga |
500 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
5705898 |
ccaacacgcggacaccggacacaacactggctcgtcaacaccgatgattatttgaaaacaaatgacataattgaatgtaatcatgtatgccagtgttgga |
5705997 |
T |
|
| Q |
501 |
caccggaaacgtcttcaatcagaagtgtccgtgccacgttgatcaaaatatagagtcaaattcaccaaaatcaaatgattcaaccaattaattacactaa |
600 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5705998 |
caccgggaacgtcttcaatcagaagtgtcggtgccacgttgatcaaaatatagagtcaaattcaccaaaatcaaatgattcaaccaattaattacactaa |
5706097 |
T |
|
| Q |
601 |
cattt |
605 |
Q |
| |
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||||| |
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| T |
5706098 |
cattt |
5706102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 38533201 - 38533164
Alignment:
| Q |
448 |
ttatttgaaaacaaatgacataattgaatgtaatcatg |
485 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||| |
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| T |
38533201 |
ttatttgaaaaaaaatgacatatttgaatgtaatcatg |
38533164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 528
Target Start/End: Complemental strand, 20740458 - 20740424
Alignment:
| Q |
494 |
tgttggacaccggaaacgtcttcaatcagaagtgt |
528 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
20740458 |
tgttggacactggaaacgtcttcaatcagaagtgt |
20740424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 483
Target Start/End: Complemental strand, 35379253 - 35379208
Alignment:
| Q |
438 |
acaccgatgattatttgaaaacaaatgacataattgaatgtaatca |
483 |
Q |
| |
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|||||||| || ||||||||| |||||| ||||||||||||||||| |
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| T |
35379253 |
acaccgataataatttgaaaaaaaatgagataattgaatgtaatca |
35379208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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