View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19095_low_7 (Length: 488)
Name: NF19095_low_7
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 9 - 286
Target Start/End: Complemental strand, 32397250 - 32396973
Alignment:
| Q |
9 |
cagagaatgggggtgtgcaaagcaatgttaaagggaaagatgagactatatctttctctgaagctaagaagcttatgagattggtgaatgtagaatctct |
108 |
Q |
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| T |
32397250 |
cagagaatgggggtgtgcaaagcaatggtaaagggaaagatgagactatatctttctctgaagctaagaagcttatgagattggtgaatgtggaatctct |
32397151 |
T |
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| Q |
109 |
aaagatgaaacttggtatggatggaaaagaagttatttcttataatgaacttattgaagcttgtgagagtatgggtgttgctaggaattctgaagaggct |
208 |
Q |
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| T |
32397150 |
aaagatgaaacttggtatggatggaaaagaagttatttcttataatgaacttattgaagcttgtgagagtatgggtgttgctaggaattctgaagaggct |
32397051 |
T |
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| Q |
209 |
gctgcatatgctaaggttcttgatgaagctggtgttattcttctcttcagggataaggtctatcttcatcctgataag |
286 |
Q |
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| T |
32397050 |
gctgcatatgctaaggttcttgatgaagctggtgttattcttctcttcagggataaggtctatcttcatcctgataag |
32396973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 362 - 473
Target Start/End: Complemental strand, 32396897 - 32396785
Alignment:
| Q |
362 |
aagttaggtataatatatctggatatataacttcaataagttagtata-atcttgatgaagctggtgaattgagtttgtcgggacaaaatttgattttgt |
460 |
Q |
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| T |
32396897 |
aagttaggtataatatatctggatacataacttcaataagttagtatatatcttgatgaagctggtgaattgagtttgtcgggacaaaatttgattttgt |
32396798 |
T |
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| Q |
461 |
agtggtttatatt |
473 |
Q |
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| T |
32396797 |
agtggtttatatt |
32396785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 286
Target Start/End: Complemental strand, 28537573 - 28537352
Alignment:
| Q |
65 |
tctgaagctaagaagcttatgagattggtgaatgtagaatctctaaagatgaaacttggtatggatggaaaagaagttatttcttataatgaacttattg |
164 |
Q |
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| T |
28537573 |
tctgaggctaagaagcttatgagattggtgaatgttgaaacacttaagatggaacttggtatgggagggaaagaaattatttcctattttgaacttcttc |
28537474 |
T |
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| Q |
165 |
aagcttgtgagagtatgggtgttgctaggaattctgaagaggctgctgcatatgctaaggttcttgatgaagctggtgttattcttctcttcagggataa |
264 |
Q |
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| T |
28537473 |
aagcttgtcagagtagtggtattgctaggaatcaagatgaggctgcaaaatttgctaaggttcttgatgatgctggggttgttctactatttagggataa |
28537374 |
T |
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| Q |
265 |
ggtctatcttcatcctgataag |
286 |
Q |
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||| ||||| |||||||||||| |
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| T |
28537373 |
ggtttatctgcatcctgataag |
28537352 |
T |
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