View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19096_high_1 (Length: 362)

Name: NF19096_high_1
Description: NF19096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19096_high_1
NF19096_high_1
[»] chr3 (5 HSPs)
chr3 (16-234)||(52796515-52796736)
chr3 (16-232)||(52099516-52099740)
chr3 (18-122)||(24696215-24696319)
chr3 (20-60)||(43659575-43659615)
chr3 (20-67)||(52253372-52253419)
[»] chr4 (9 HSPs)
chr4 (16-217)||(22422897-22423099)
chr4 (34-232)||(39843341-39843538)
chr4 (16-180)||(8720281-8720445)
chr4 (20-172)||(40547116-40547268)
chr4 (17-126)||(34412291-34412400)
chr4 (20-126)||(35105459-35105565)
chr4 (21-61)||(33633615-33633655)
chr4 (20-65)||(44937575-44937620)
chr4 (20-60)||(41327088-41327128)
[»] chr1 (3 HSPs)
chr1 (16-232)||(10615988-10616203)
chr1 (17-232)||(11240417-11240631)
chr1 (102-234)||(2167588-2167717)
[»] chr2 (4 HSPs)
chr2 (16-232)||(27869098-27869314)
chr2 (16-232)||(37472350-37472578)
chr2 (20-61)||(9224650-9224691)
chr2 (20-61)||(9272519-9272560)
[»] chr6 (3 HSPs)
chr6 (16-232)||(251930-252146)
chr6 (16-165)||(5045650-5045799)
chr6 (158-232)||(5045557-5045631)
[»] chr8 (8 HSPs)
chr8 (16-187)||(2116266-2116436)
chr8 (20-172)||(3955728-3955880)
chr8 (20-172)||(19439487-19439639)
chr8 (20-172)||(19575636-19575788)
chr8 (27-172)||(15358126-15358271)
chr8 (20-172)||(13636572-13636723)
chr8 (20-172)||(13736985-13737136)
chr8 (20-65)||(33099137-33099182)
[»] chr7 (5 HSPs)
chr7 (16-181)||(45657460-45657624)
chr7 (21-172)||(27542191-27542342)
chr7 (20-172)||(18534706-18534859)
chr7 (169-200)||(45657641-45657672)
chr7 (20-126)||(34996206-34996312)
[»] scaffold0072 (2 HSPs)
scaffold0072 (16-165)||(46749-46898)
scaffold0072 (158-232)||(46657-46730)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 52796515 - 52796736
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  52796515 caactttctccagtttggaatgaagagaaatagggaagagagattaaaaagtagtgggacccatcactttttggtttctcctcacaatagagaagaaatg 52796614  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgtagggcatcttagta--- 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       
T  52796615 ggagagagaagactattcactttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgtaggacatcttagtaatt 52796714  T
Q  213 ttttttataaataatcaacatt 234  Q
    ||||||||||||||||||||||    
T  52796715 ttttttataaataatcaacatt 52796736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 52099516 - 52099740
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctc--------acaatagag 107  Q
    |||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| |         | |||||||    
T  52099516 caactttctcttgtttagaatggagagaaataggaaagagagattaaaaagtagtaggatccatcactttttggtttctcttttagagaagaaaatagag 52099615  T
Q  108 aagaaatgggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgta-gggcatc 206  Q
    |||||||| |||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  52099616 aagaaatgagagagagaagactattcactttgttgtttatttattgcccttgcattaaaatattatattttcaatctattcactttattgtaggggcatc 52099715  T
Q  207 ttagtattttttataaataatcaaca 232  Q
    || |||  ||||||||||||| ||||    
T  52099716 ttggta-cttttataaataattaaca 52099740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 24696319 - 24696215
Alignment:
Q  18 actttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatggg 117  Q
    |||||||| ||||||||| | ||| ||||| |||||||||||| |||| | |||||| ||| |||| |||||||||||| || || || ||||||| |||    
T  24696319 actttctcttgtttggaaaggagaaaaatatggaagagagattgaaaaattgtgggacccaccactttttggtttctccacataacagcgaagaaagggg 24696220  T
Q  118 agaga 122  Q
    |||||    
T  24696219 agaga 24696215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 43659615 - 43659575
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagatt 60  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  43659615 tttctcttgtttggaatgcagagaaatagggaagagagatt 43659575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 52253372 - 52253419
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagt 67  Q
    |||| |||||||||||| |||||||||||| ||||| |||||||||||    
T  52253372 tttcgcctgtttggaataaagagaaataggaaagagggattaaaaagt 52253419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 22423099 - 22422897
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |    
T  22423099 caactttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggaaccatcactttttggtttctcctcacaatagagaagaaagg 22423000  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgta-gggcatcttagtatt 214  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |    
T  22422999 ggagagagaagactattcactttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgtatgggcatcttggtact 22422900  T
Q  215 ttt 217  Q
    |||    
T  22422899 ttt 22422897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 39843341 - 39843538
Alignment:
Q  34 aatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggagagagaagactattc 133  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39843341 aatgaggagaaatagggaagagagattaaaaagtagtggga-ccatcactttttggtttctcctcacaacagagaagaaatgggagagagaagactattc 39843439  T
Q  134 attttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgta-gggcatcttagtattttttataaataatcaaca 232  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||  ||||||||||||||||||    
T  39843440 actttgttgttccattattgcccttgcattaaaatattatattctcaatctatttactttattgtaggggcatcttagta-cttttataaataatcaaca 39843538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 8720445 - 8720281
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    ||||||||||  |||||||||||||||||||||| |||||||||| ||||||||||||| ||| |||  |||  ||||| |||||| |||  |||||| |    
T  8720445 caactttctctagtttggaatgaagagaaataggaaagagagatttaaaagtagtgggacccaccacctttttatttctactcacactagcaaagaaagg 8720346  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctca 180  Q
      ||||| ||| || || |||| ||||||||||| ||||||||| ||| ||||||||||||||||    
T  8720345 caagagataaggcttttaatttggttgttccatttttgcccttgtattgaaatattatattctca 8720281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 40547116 - 40547268
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggag 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  |||  | |||||||||||||| |||||||  || |    
T  40547116 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggacccaccacctttttatgtctcctcacaatagggaagaaagtgggg 40547215  T
Q  120 agagaagactattcattttgttgttccattattgcccttgcattaaaatatta 172  Q
    ||||||| || || || ||||| || | || || |||||| ||| ||||||||    
T  40547216 agagaaggcttttaatcttgttatttcttttttacccttgtattgaaatatta 40547268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 34412291 - 34412400
Alignment:
Q  17 aactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgg 116  Q
    |||||||||||||||| |||| ||||||| || ||||||||| ||||||   |||||| |||   || |||| ||||||| || || |||||||||||||    
T  34412291 aactttctcctgtttgaaatgcagagaaagagagaagagagactaaaaaactgtgggacccactgctttttgttttctccacaaaacagagaagaaatgg 34412390  T
Q  117 gagagagaag 126  Q
    ||||||||||    
T  34412391 gagagagaag 34412400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 35105459 - 35105565
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggag 119  Q
    ||||||||||||| |||| ||||||| |||||||||||| ||||||   |||||  |||  ||| |||| ||||||| || || |||||||||| |||||    
T  35105459 tttctcctgtttgtaatgcagagaaagagggaagagagactaaaaatatgtggggcccacaactttttgttttctccacaaaacagagaagaaacgggag 35105558  T
Q  120 agagaag 126  Q
    |||||||    
T  35105559 agagaag 35105565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 33633655 - 33633615
Alignment:
Q  21 ttctcctgtttggaatgaagagaaatagggaagagagatta 61  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  33633655 ttctcttgtttggaatgcagagaaatagggaagagagatta 33633615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 44937620 - 44937575
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaa 65  Q
    |||||| ||||||||||| | |||||||||||||||||||| ||||    
T  44937620 tttctcttgtttggaatgcaaagaaatagggaagagagatttaaaa 44937575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 41327128 - 41327088
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagatt 60  Q
    |||||| ||||| ||||| ||||||||||||||||||||||    
T  41327128 tttctcttgtttagaatgcagagaaatagggaagagagatt 41327088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 10615988 - 10616203
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  10615988 caactttctcttgtttgaaatgaagagaaatagggaagagagattaaaaagtagtgggacccatcactttttggtttctcctcaca-tagagaagaaatg 10616086  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgta-gggcatcttagtatt 214  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
T  10616087 ggagagagaagactattcactttgttgtttcattattgcccttgcattaaaatattatattctcaatctattcactttattgtaggggcatcttagta-c 10616185  T
Q  215 ttttataaataatcaaca 232  Q
    ||||||||||||||||||    
T  10616186 ttttataaataatcaaca 10616203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 11240417 - 11240631
Alignment:
Q  17 aactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgg 116  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||| | | |||  ||||||||||||||||| ||||||||||| |     
T  11240417 aactttctcttgtttagaatgaagagaaataaggaagagagattaaaaaatagtgggacctaccaca-tttggtttctcctcacagtagagaagaaagga 11240515  T
Q  117 gagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgtaggg-catcttagtattt 215  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  |    
T  11240516 gagagagaacactattcactttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgtagggacatcttaata-ct 11240614  T
Q  216 tttataaataatcaaca 232  Q
    |||||||||||||||||    
T  11240615 tttataaataatcaaca 11240631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 2167588 - 2167717
Alignment:
Q  102 atagagaagaaatgggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgtagg 201  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||  ||    
T  2167588 atagagaagaaatgggagacagaatactattcactttgttgttccattattgcccttgcattaaaatattatattctcaatatatttattttattg--gg 2167685  T
Q  202 gcatcttagtattttttataaataatcaacatt 234  Q
    |||||| ||||  ||||||||||||||||||||    
T  2167686 gcatctcagta-cttttataaataatcaacatt 2167717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 27869314 - 27869098
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||  |||||||||||||||||||||||| |    
T  27869314 caactttctattgtttgaaatgaagagaaatagggaagagagattaaaaagtagtgggacccattacttttttatttctcctcacaatagagaagaaagg 27869215  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgtaggg-catcttagtatt 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  27869214 ggagagagaagactattcactttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgtagggacatcttagta-t 27869116  T
Q  215 ttttataaataatcaaca 232  Q
    ||||||||||||||||||    
T  27869115 ttttataaataatcaaca 27869098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 37472578 - 37472350
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaat- 114  Q
    |||||||||| ||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||      
T  37472578 caactttctcttgtttggaacgaagagaaataggaaatagagattaaaaagtaatgggatccatcactttttggtttctcctcacaatagagaagaaaat 37472479  T
Q  115 -----------gggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgta-ggg 202  Q
               |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37472478 agagaagaaaggggagacagaagactattcactttgttgttccattgttgcccttgcattaaaatattatattctcaatctattcactttattgtagggg 37472379  T
Q  203 catcttagtattttttataaataatcaaca 232  Q
     ||||| ||| |||||||||||||||||||    
T  37472378 tatcttggta-tttttataaataatcaaca 37472350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 9224650 - 9224691
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagatta 61  Q
    |||||| ||||| ||||| |||||||||||||||||||||||    
T  9224650 tttctcttgtttagaatgcagagaaatagggaagagagatta 9224691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 9272519 - 9272560
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagatta 61  Q
    |||||| |||||| |||| |||||||||||||||||||||||    
T  9272519 tttctcttgtttgaaatgcagagaaatagggaagagagatta 9272560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 252146 - 251930
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||| |    
T  252146 caactttatcttgtttggaatgaagagaaatagggaagagagattaaaaagtaatgggacccatcactttttggttgctcctcacaatagagaagaaagg 252047  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgta-gggcatcttagtatt 214  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||      
T  252046 ggagagagaagactattcactttgttgttccattattgcccttgcattaaaatattatattctcaatctattcactttattgtaggggcatcttgata-c 251948  T
Q  215 ttttataaataatcaaca 232  Q
    ||||||||||||||||||    
T  251947 ttttataaataatcaaca 251930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 5045799 - 5045650
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||| |    
T  5045799 caactttctcttgtttggaatggagagaaatagggaagagagattaaaaagtagtgggacccatcactttttggtttcttctcacaatcgagaagaaagg 5045700  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaa 165  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  5045699 ggagagagaagactattcactttgttgttccattattgccgttgcattaa 5045650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 5045631 - 5045557
Alignment:
Q  158 tgcattaaaatattatattctcaatctattcactttattgtaggg-catcttagtattttttataaataatcaaca 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  ||||||||||||||||||    
T  5045631 tgcattaaaatattatattctcaatctattcactttattgtagggccatcttggta-cttttataaataatcaaca 5045557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 2116266 - 2116436
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  2116266 caactttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcatt-tttggtttctcctcgcaatagagaagaaatg 2116364  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaatctatt 187  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2116365 agagagagaagactattcactttgttgttccattattgcccttgcattaaaatattatattctcaatttatt 2116436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 3955880 - 3955728
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggag 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  |||  | ||||||||||||||||||||||  || |    
T  3955880 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggacccaccacctttttatgtctcctcacaatagagaagaaagtgggg 3955781  T
Q  120 agagaagactattcattttgttgttccattattgcccttgcattaaaatatta 172  Q
    ||||||| || || || ||||| || | ||||| |||||| ||| ||||||||    
T  3955780 agagaaggcttttaatcttgttattactttattacccttgtattgaaatatta 3955728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 19439639 - 19439487
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggag 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  |||  | |||||||||||||| |||||||  || |    
T  19439639 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggacccaccacctttttatgtctcctcacaatagggaagaaagtgggg 19439540  T
Q  120 agagaagactattcattttgttgttccattattgcccttgcattaaaatatta 172  Q
    ||| ||| || || || ||||| |||| ||||| |||||| ||| ||||||||    
T  19439539 agataaggcttttaatcttgttattcctttattacccttgtattgaaatatta 19439487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 19575788 - 19575636
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggag 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  |||  | |||||||||||||| |||||||  || |    
T  19575788 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggacccaccacctttttatgtctcctcacaatagggaagaaagtgggg 19575689  T
Q  120 agagaagactattcattttgttgttccattattgcccttgcattaaaatatta 172  Q
    ||| ||| || || || ||||| |||| ||||| |||||| ||| ||||||||    
T  19575688 agataaggcttttaatcttgttattcctttattacccttgtattgaaatatta 19575636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 15358126 - 15358271
Alignment:
Q  27 tgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggagagagaag 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  |||  | |||||||||||||| |||||||  || ||||||||    
T  15358126 tgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggacccaccacctttttatgtctcctcacaatagggaagaaagtggggagagaag 15358225  T
Q  127 actattcattttgttgttccattattgcccttgcattaaaatatta 172  Q
     || || || ||||| |||| || || |||||| ||| ||||||||    
T  15358226 gcttttaatcttgttattccttttttacccttgtattgaaatatta 15358271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 13636572 - 13636723
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggag 119  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||  || |||  |||  | ||||||| |||||| |||||||  || |    
T  13636572 tttctcttgtttggaatgaagagaaataggaaagagatattaaaaagtagtgggacacaccacctttttatgtctcctcgcaatagggaagaaagtgggg 13636671  T
Q  120 agagaagactattcattttgttgttccattattgcccttgcattaaaatatta 172  Q
    ||||||| || || || ||||| |||| || || |||||| ||| ||||||||    
T  13636672 agagaaggcttttaatcttgttattcc-tttttacccttgtattgaaatatta 13636723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 13736985 - 13737136
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggag 119  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||  || |||  |||  | ||||||| |||||| |||||||  || |    
T  13736985 tttctcttgtttggaatgaagagaaataggaaagagatattaaaaagtagtgggacacaccacctttttatgtctcctcgcaatagggaagaaagtgggg 13737084  T
Q  120 agagaagactattcattttgttgttccattattgcccttgcattaaaatatta 172  Q
    ||||||| || || || ||||| |||| || || |||||| ||| ||||||||    
T  13737085 agagaaggcttttaatcttgttattcc-tttttacccttgtattgaaatatta 13737136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 33099137 - 33099182
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaa 65  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||    
T  33099137 tttctcttgtttggaatgcagagaaatagggaagagagatttaaaa 33099182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 45657460 - 45657624
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||  ||||| ||||||||||    
T  45657460 caactttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggacccatcatt-tttggtttctccttgcaatatagaagaaatg 45657558  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaaaatattatattctcaa 181  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45657559 ggagagagaagactattcactttgttgttccattattgcccttgcattaaaatattatattctcaa 45657624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 27542191 - 27542342
Alignment:
Q  21 ttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggaga 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||  |||  | |||||||||||||| |||||||  |||||    
T  27542191 ttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtaatgggacccaccacctttttatgtctcctcacaatagggaagaaagtggaga 27542290  T
Q  121 gagaagactattcattttgttgttccattattgcccttgcattaaaatatta 172  Q
    |||||| || || || ||||| |||| || || |||||| ||| ||||||||    
T  27542291 gagaaggcttttaatcttgttattccttttttacccttgtattgaaatatta 27542342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 18534859 - 18534706
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaa-tggga 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||  |||  | ||||||| |||||| ||||||| ||||     
T  18534859 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaaatagtgggacccaccacctttttatgtctcctcgcaatagggaagaaagtgggg 18534760  T
Q  119 gagagaagactattcattttgttgttccattattgcccttgcattaaaatatta 172  Q
    |||||||| || || || ||||| |||| || || || ||| ||| ||||||||    
T  18534759 gagagaaggcttttaatcttgttattccttttttacctttgtattgaaatatta 18534706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 200
Target Start/End: Original strand, 45657641 - 45657672
Alignment:
Q  169 attatattctcaatctattcactttattgtag 200  Q
    ||||||||||||||||||||||||||||||||    
T  45657641 attatattctcaatctattcactttattgtag 45657672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 34996206 - 34996312
Alignment:
Q  20 tttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatgggag 119  Q
    |||||| ||||||||||| |||||||||| || || ||||||||||  ||| ||||||| |||| |||   |||||  || | ||| |||||||| ||||    
T  34996206 tttctcttgtttggaatgcagagaaatagagaggaaagattaaaaaacagtaggatccaccactttttatcttctctccaaagtagggaagaaataggag 34996305  T
Q  120 agagaag 126  Q
    |||||||    
T  34996306 agagaag 34996312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 46898 - 46749
Alignment:
Q  16 caactttctcctgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccatcactctttggtttctcctcacaatagagaagaaatg 115  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |    
T  46898 caactttctcttgtttggaatggagagaaatagggaagagagattaaaaagtagtgggacccatcactttttggtttctcctcacaatagagaagaaagg 46799  T
Q  116 ggagagagaagactattcattttgttgttccattattgcccttgcattaa 165  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  46798 ggagagagaagactattcactttgttgttccattattgccgttgcattaa 46749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 46730 - 46657
Alignment:
Q  158 tgcattaaaatattatattctcaatctattcactttattgtagggcatcttagtattttttataaataatcaaca 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  46730 tgcattaaaatattatattctcaatctattcactttattgtagggcatcttggta-cttttataaataatcaaca 46657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University