View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19096_low_2 (Length: 307)
Name: NF19096_low_2
Description: NF19096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19096_low_2 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 32601719 - 32601431
Alignment:
| Q |
16 |
attcagatgccgggtatcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32601719 |
attcagatgccgggtatcgacatattaaattttatttcatgatcatgaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaat |
32601620 |
T |
|
| Q |
116 |
caaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatttga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32601619 |
caaacttgtagtaaacgtatgcctggatcactaggacatgaaatacaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatttga |
32601520 |
T |
|
| Q |
216 |
aaatcatttttcacttttatcaacattattatatcctatttataatcttatgttgttaactaatattggttcaaatttttctttagggagtc |
307 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32601519 |
aaatcatttttcaattttatcaaca---ttatattctatttctaaccttatgttgttaaccaatattggttcaaatttttctttagggagtc |
32601431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 32591247 - 32590962
Alignment:
| Q |
16 |
attcagatgccgggtatcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaat |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||| | || | | ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32591247 |
attcagatgccgggtatcaacatattaaatttt--ttg-taatagtgactatgattgttcaaacattatttatgatcacttacaattgctatgcagaaat |
32591151 |
T |
|
| Q |
116 |
caaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatttga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
32591150 |
caaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtatatcacatatacatacattatttga |
32591051 |
T |
|
| Q |
216 |
aaatcatttttcacttttatcaacattattatatcctatttataatcttatgttgttaactaatattggttcaaatttttctttagggagtc |
307 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||| | |||||||||||||||||||||| |||| || || ||| |||||||||||||||| |
|
|
| T |
32591050 |
aagtcatttttcacttttatcaaca---ttatatcttgtttataatcttatgttgttaaccaatactgatttaaaattttctttagggagtc |
32590962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 24882965 - 24883059
Alignment:
| Q |
97 |
acaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtaa |
191 |
Q |
| |
|
|||||| || |||||||||||||| || |||||| | ||||| |||||||| || |||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
24882965 |
acaatttctctgcagaaatcaaacatgcagtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgggtaa |
24883059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 34579064 - 34578890
Alignment:
| Q |
16 |
attcagatgccgggtatcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaat |
115 |
Q |
| |
|
||||||||||||||||| || |||||||| || ||| ||| ||| | ||| |||||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
34579064 |
attcagatgccgggtattaacgcattaaattgtacttggtgaacatgactataattgttcaagcaatatttttgatcacttacaatttttatgcagaaat |
34578965 |
T |
|
| Q |
116 |
caaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggta |
190 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34578964 |
ctaacttgtagtaaacgtatgcctggatcactgggacatgaaatacaagatgccaaaacatttgcttcttgggta |
34578890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 35124751 - 35124556
Alignment:
| Q |
16 |
attcagatgccgggtatcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaat |
115 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||||||||||||| || ||| || || |||||||||| || || |||||| |||| |||||| |
|
|
| T |
35124751 |
attcagatgctgggtatcaacatattaaattatatttgatgatcataacaattattttttaaccattatttataatatct-acaatttttatgtagaaat |
35124653 |
T |
|
| Q |
116 |
caaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatt |
212 |
Q |
| |
|
| ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
35124652 |
ctaacttgtagtaaacgcatgcctggatcactaggacatgaaatacaagatgccaaaacatttgcttcttgggtatatcatatatacattcattatt |
35124556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 34594733 - 34594602
Alignment:
| Q |
88 |
tgatcacttacaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgg |
187 |
Q |
| |
|
||||||||| ||||| ||||||||| || |||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
34594733 |
tgatcacttgcaatttttatgcagaactcttacttgtagtaaacgcatgcctggatcactgggacatgaagaacaagatgctaaaacatttgcttcttgg |
34594634 |
T |
|
| Q |
188 |
gta-aaccatatataca-tacattatttgaaa |
217 |
Q |
| |
|
||| | ||||||||| |||||||||||||| |
|
|
| T |
34594633 |
gtattataatatatacattacattatttgaaa |
34594602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University