View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19096_low_4 (Length: 253)
Name: NF19096_low_4
Description: NF19096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19096_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 31543196 - 31543419
Alignment:
| Q |
13 |
aaaattgtaacttggggatcacaaggtccaacatcatttcgacaaaagttatttccttcccaacttgcattaacaccctcgtgaaacacaggtatcggtc |
112 |
Q |
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| T |
31543196 |
aaaattgtaacttggggatcacaaggtccaacatcatttcgacaaaacttatttccttcccaacttgcattaacaccctcgtgaaacacaggtatcggtc |
31543295 |
T |
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| Q |
113 |
cttgaagaaaattgttgtccaaagagatgttcttcaagctagagagagtgcatagagaatgtggaaccaaaccaactaattgattggaatgaagctgaag |
212 |
Q |
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| T |
31543296 |
cttgaagaaaattgatgtccaaagagatgttcttcaagctagagagagtgcatagcgaatgtggaaccaaaccaactaattgattggaatgaagctgaag |
31543395 |
T |
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| Q |
213 |
atcaaacaaattagtggaactaga |
236 |
Q |
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| T |
31543396 |
atcaaacaaattagtggaactaga |
31543419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 31551444 - 31551233
Alignment:
| Q |
20 |
taacttggggatcacaaggtccaacatcatttcgacaaaagttatttccttcccaacttgcattaacaccctcgtgaaacacaggtatcggtccttgaag |
119 |
Q |
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| T |
31551444 |
taacctggggatcacaaggtccaacattgctacgacaaaagttatttgattcccaagttgccttaacacgcttgtgaaacataggtattggtccttcaag |
31551345 |
T |
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| Q |
120 |
aaaattgttgtccaaagagatgttcttcaagctagagagagtgcatagagaatgtggaaccaaaccaactaattgattggaatgaagctgaagatcaaac |
219 |
Q |
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| T |
31551344 |
attattgttgtccaaagagatgttggtcaagctagggagagagaacaacgaagatggaaccaaacctattaaaccatttgagtgaagttggagatcaaac |
31551245 |
T |
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| Q |
220 |
aaattagtggaa |
231 |
Q |
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| T |
31551244 |
aaatgagtggaa |
31551233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 32350790 - 32350958
Alignment:
| Q |
22 |
acttggggatcacaaggtccaacatcatttcgacaaaagttatttccttcccaacttgcattaacaccctcgtgaaaca---ca--ggtatcggtccttg |
116 |
Q |
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| T |
32350790 |
acttggggatcacaaggtccaacatcactcccaaaaaatttattta-ttcccaagttgccttaacacccttttgaaacattacattgatattggtcctta |
32350888 |
T |
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| Q |
117 |
aagaaaattgttgtccaaagagatgttcttcaagctagagagagtgcatagagaatgtggaaccaaacca |
186 |
Q |
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| T |
32350889 |
aagaaaattgtggtccaaagagatgctcttcaagttagggagagtgaacaaagaaggtggaatcaaacca |
32350958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 32357578 - 32357526
Alignment:
| Q |
109 |
ggtccttgaagaaaattgttgtccaaagagatgttcttcaagctagagagagt |
161 |
Q |
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| T |
32357578 |
ggtccttgaagaaaattgtggtccaaagagatgttcttcaagttagggagagt |
32357526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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