View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19096_low_5 (Length: 232)
Name: NF19096_low_5
Description: NF19096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19096_low_5 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 264216 - 264018
Alignment:
| Q |
17 |
agtaaaagtgtgcagattttaagagggtatctttgacaccatattggaaaatctcacattctgtggggatcggactagcccagttaaagtgaaccgtgat |
116 |
Q |
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| T |
264216 |
agtaagagtgtgcagattttaagagggtatctttgacaccatattggaaaatctcacagtctgtggggattggactagcccagttaaggtgaaccatgat |
264117 |
T |
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| Q |
117 |
aacttctccgtttcatgttctctatccattaacttcttcatttgatagttaataaacctacacaatcatcaaatctcttcttttatcaaccatatttca |
215 |
Q |
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| T |
264116 |
aacttcttcgtttcatgttctttatccattaacttcttcatttgatagttaataaacctacacaatcatcaaatctcttcttttatcaaccatatttca |
264018 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 33699818 - 33699765
Alignment:
| Q |
21 |
aaagtgtgcagattttaagagggtatctttgacaccatattggaaaatctcaca |
74 |
Q |
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| T |
33699818 |
aaagtgtgcagaatctgagagggtatctcagacaccatattggaaaatctcaca |
33699765 |
T |
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