View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19097_high_11 (Length: 501)
Name: NF19097_high_11
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Complemental strand, 2349737 - 2349267
Alignment:
| Q |
15 |
agtttcatccatggccttcatatgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctcc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2349737 |
agtttcatccatggccttcatatgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctcc |
2349638 |
T |
|
| Q |
115 |
ttcaaagctttcacacttctttgagcttcttcaacaatagtttttgcaccgaaatatctcttcccaacagccattcgaagaaccatattaaatgttaggt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2349637 |
ttcaaagctttcacacttctttgagcttcttcaacaatagtttttgcaccgaaatatctcttcccaacagccattcgaagaaccatattaaatgttaggt |
2349538 |
T |
|
| Q |
215 |
gtgtaaaccattgcttcaaatccaccaacatatagtttgacggatatgactctttctttttgctataccaaacatcgaagagctctttaattgatgtttg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2349537 |
gtgtaaaccattgcttcaaatccaccaacatatagtttgacggatatgactctttctttttgctataccaaacatcgaagagctctttaattgatgtttg |
2349438 |
T |
|
| Q |
315 |
aacttcagaaacacgaacatgttgttgttgaataattcgacgattggtgaggatctctaaggttacaattttgcgaagttcacgccaataaggaccataa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2349437 |
aacttcagaaacacgaacatgttgttgttgaataattcgacgattggtgaggatctctaaggttacaattttgcgaagttcacgccaataaggaccataa |
2349338 |
T |
|
| Q |
415 |
ggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatgagcttgggacgagacgaaac |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2349337 |
ggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatgagcttgggacgagacgaaac |
2349267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 485
Target Start/End: Complemental strand, 2306373 - 2305897
Alignment:
| Q |
15 |
agtttcatccatggccttcatatgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctcc |
114 |
Q |
| |
|
|||||| | ||||||||||| || ||||||||||||| | | || || ||||||||||||||||||||||| |||||||| |||||| |||| | | | |
|
|
| T |
2306373 |
agtttctttcatggccttcacataaccaccaaaatcacaaaaattcaagcaaggaataacatctcccaccgtaattaccccaaacaaatgcatcaatttc |
2306274 |
T |
|
| Q |
115 |
ttcaaagctttcacacttctttgagcttcttcaac------aatagtttttgcaccgaaatatctcttcccaacagccattcgaagaaccatattaaatg |
208 |
Q |
| |
|
|||||||||||||||| | ||| || ||| || | | ||||| || ||| |||||||| ||||||||| |||||||||||||||| || |||| |
|
|
| T |
2306273 |
ttcaaagctttcacacatattttagattcgtcttcctccgaactagttattagaccaaaatatcttttcccaacaaccattcgaagaaccatgttgaatg |
2306174 |
T |
|
| Q |
209 |
ttaggtgtgtaaaccattgcttcaaatccaccaacatatagtttgacggatatgactctttctttttgctataccaaacatcgaagagctctttaattga |
308 |
Q |
| |
|
||| |||||||||||||| | ||| || || |||| |||||||| | ||| ||||| || |||||| || |||| || || || ||||||||||| || |
|
|
| T |
2306173 |
ttaaatgtgtaaaccattgatccaactctactaacacgtagtttgatgaatacgactcgttatttttggtagaccagacgtcaaatagctctttaatcga |
2306074 |
T |
|
| Q |
309 |
tgtttgaacttcagaaacacgaacatgttgttgttgaataattcgacgattggtgaggatctctaaggttacaattttgcgaagttcacgccaataagga |
408 |
Q |
| |
|
|| | |||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||| |||||||||| |||||||||||| |
|
|
| T |
2306073 |
tgctcgaacctcagaaacacgaacatgttgttgttgttcgattcgacgatttgtgaggacctctagggttacaatcttgcgaagttggcgccaataagga |
2305974 |
T |
|
| Q |
409 |
ccataaggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatgagcttgggacgagacgaaac |
485 |
Q |
| |
|
||||| || ||||| ||||| | ||||| |||| | ||||||| |||| || |||||||||||||||||||| |
|
|
| T |
2305973 |
ccatacggaccaaaaccaaacattgctccattatagcccaagtgtttcgttgcaacaagcttgggacgagacgaaac |
2305897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 485
Target Start/End: Complemental strand, 2338694 - 2338218
Alignment:
| Q |
15 |
agtttcatccatggccttcatatgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctcc |
114 |
Q |
| |
|
|||||| | ||||| ||||| || ||||||||||||||| | || || |||||||||| ||||||||| |||||||| || |||||| |||| | | |
|
|
| T |
2338694 |
agtttctttcatggtcttcacataaccaccaaaatcaaaaaaattcaagcaaggaataatatctcccactgtgattacacctaacaaatgcatccatttc |
2338595 |
T |
|
| Q |
115 |
ttcaaagctttcacacttctttgagcttcttcaac------aatagtttttgcaccgaaatatctcttcccaacagccattcgaagaaccatattaaatg |
208 |
Q |
| |
|
|||||||| || |||| ||||| || |||||| | | ||||| || ||| |||||||| ||||||||| |||||||||||||||| ||||| | |
|
|
| T |
2338594 |
ttcaaagcattgacacatcttttagattcttcttcctcagaactagttgttagaccaaaatatcttttcccaacaaccattcgaagaaccatgttaaacg |
2338495 |
T |
|
| Q |
209 |
ttaggtgtgtaaaccattgcttcaaatccaccaacatatagtttgacggatatgactctttctttttgctataccaaacatcgaagagctctttaattga |
308 |
Q |
| |
|
||| |||||||||||||| | ||| || || | || ||||||||| | ||||||||| || ||||||||| |||||||| |||||||||||||| || |
|
|
| T |
2338494 |
ttaaatgtgtaaaccattgatccaactctactagcacatagtttgatgaatatgactcattgtttttgctagtccaaacattaaagagctctttaatcga |
2338395 |
T |
|
| Q |
309 |
tgtttgaacttcagaaacacgaacatgttgttgttgaataattcgacgattggtgaggatctctaaggttacaattttgcgaagttcacgccaataagga |
408 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||| | | ||| ||||| ||||||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
2338394 |
tgcttgaacttcaggaacacgaacatgttgttgttgtttgactcggcgatttgtgaggacctctaaggttacaatcttgcgaagttggcgccaataagga |
2338295 |
T |
|
| Q |
409 |
ccataaggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatgagcttgggacgagacgaaac |
485 |
Q |
| |
|
||||| ||| ||| ||||| | |||||| ||| | |||||||| |||| || ||||| |||||||||||||| |
|
|
| T |
2338294 |
ccatatggtgcaagaccaaacatggctccattataacccaagtgttctgttgcaacaagctttggacgagacgaaac |
2338218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 2356366 - 2356309
Alignment:
| Q |
31 |
ttcatatgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtga |
88 |
Q |
| |
|
|||| ||| |||||||||||||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
2356366 |
ttcacatggccaccaaaatcaaaccgttctaaacaaggaatagcatctcccaccgtga |
2356309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 2362062 - 2361940
Alignment:
| Q |
24 |
catggccttcatatgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctccttcaaagct |
123 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| | ||||||| ||||||| | |||| ||||| ||||| ||||| | ||| | |||||| |
|
|
| T |
2362062 |
catggccttcacatggccaccaaaatcaaaccattttagaaaaggaatggcatctcctattgtgaacacccctaacaatcgcatcaactcttgtaaagct |
2361963 |
T |
|
| Q |
124 |
ttcacacttctttgagcttcttc |
146 |
Q |
| |
|
|| | || |||||| |||||||| |
|
|
| T |
2361962 |
tttatacatctttgcgcttcttc |
2361940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 2366464 - 2366385
Alignment:
| Q |
220 |
aaccattgcttcaaatccaccaacatatagtttgacggatatgactctttctttttgctataccaaacatcgaagagctctttaat |
305 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||||| |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2366464 |
aaccattgcttcatctccaccaacacgtagtttga------tgactcattctttttactaaaccaaacatcgaagagctctttaat |
2366385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 2366669 - 2366547
Alignment:
| Q |
24 |
catggccttcatatgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctccttcaaagct |
123 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||||||| ||||||| | |||| ||||| |||||| |||| | || || |||||| |
|
|
| T |
2366669 |
catggccttcacatggccaccaaaatcaaaccattttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagct |
2366570 |
T |
|
| Q |
124 |
ttcacacttctttgagcttcttc |
146 |
Q |
| |
|
|| |||| |||||| ||||||| |
|
|
| T |
2366569 |
tttacacatctttgcccttcttc |
2366547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 2361826 - 2361781
Alignment:
| Q |
260 |
atgactctttctttttgctataccaaacatcgaagagctctttaat |
305 |
Q |
| |
|
||||||| |||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
2361826 |
atgactcgttctttttactaaaccaaacattgaagagctctttaat |
2361781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 5805600 - 5806076
Alignment:
| Q |
15 |
agtttcatccatggccttcatatgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctcc |
114 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||| ||||| |||| ||||| |
|
|
| T |
5805600 |
agtttcattcatggcctttacatgaccaccaaaatcaaaccatttgaaacatggaataacatctcccacagtgattatccctgacaaatgcatcatctca |
5805699 |
T |
|
| Q |
115 |
ttcaaagctttcacacttctttgagcttcttc------aacaatagtttttgcaccgaaatatctcttcccaacagccattcgaagaaccatattaaatg |
208 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||||||||||||| ||| || ||| ||||||||||||| |
|
|
| T |
5805700 |
ttcaaagctttcacagttctttgagctttttcttcatcaacaatagtttttgcaccaaaatatctcttcccaacaaccaatctaaggaccatattaaatg |
5805799 |
T |
|
| Q |
209 |
ttaggtgtgtaaaccattgcttcaaatccaccaacatatagtttgacggatatgactctttctttttgctataccaaacatcgaagagctctttaattga |
308 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||| ||||||||| |||| ||| || |||||||| ||| |||||| || ||||||||||||||| || |
|
|
| T |
5805800 |
ttacgtgtgtaaaccattgcttcaagtccaccaacacatagtttgatggatttgattcgttcttttttctagaccaaatattgaagagctctttaatcga |
5805899 |
T |
|
| Q |
309 |
tgtttgaacttcagaaacacgaacatgttgttgttgaataattcgacgattggtgaggatctctaaggttacaattttgcgaagttcacgccaataagga |
408 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || | || |||| ||||||| |||||||| || ||| |||||||| | |||||||| ||| |
|
|
| T |
5805900 |
tgtttgaacttcagaaacacgaatatgttgatgatgctcgactctacgactggtgagaatctctaaatttgaaatcttgcgaaggtggcgccaatatgga |
5805999 |
T |
|
| Q |
409 |
ccataaggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatgagcttgggacgagacgaaac |
485 |
Q |
| |
|
||||| | |||||||||| | ||||||| ||| ||||||||||| |||| || ||||| |||||||||||||| |
|
|
| T |
5806000 |
ccataggccgcaaagccaaacatggctcctttataagctaagtgttcagttgcaacaagctttggacgagacgaaac |
5806076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 4303827 - 4303745
Alignment:
| Q |
24 |
catggccttcatatgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgca |
106 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||||||| |||||| | |||||||||| |||| ||||| | |||||||| |
|
|
| T |
4303827 |
catggccttcacatggcccccaaaatcaaaccattttaaaaaaggaagagcatctcccactgtgaacacccccatcaaacgca |
4303745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 41341966 - 41341866
Alignment:
| Q |
28 |
gccttcatatgaccaccaaaatcaaaccatttta-aacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctccttcaaagctttc |
126 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| || | |||| | || | |||||||||| ||||| |||||||| | ||||| | |||||||||| |
|
|
| T |
41341966 |
gccttcacatggccaccaaaatcaaaccattttagaaaagggaagagcaccacccaccgtgaacacccctaacaaacgtaacatctcttccaaagctttc |
41341867 |
T |
|
| Q |
127 |
a |
127 |
Q |
| |
|
| |
|
|
| T |
41341866 |
a |
41341866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University