View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_14 (Length: 459)
Name: NF19097_high_14
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 15147012 - 15147438
Alignment:
| Q |
16 |
atataaatcgtaatatgaaagcaataataaaactaaccaaattgtgatgtgtaaataaaattatatacctaaggttgttcaaaaaactgaaatggttcta |
115 |
Q |
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| T |
15147012 |
atataaatcggagtatgaaagcaataataaaactaaccaaattgtgatgtgtaaataaaattatatacctaaggttgttcaaaaaactgaaatggttcta |
15147111 |
T |
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| Q |
116 |
agcacatgcacatgttatcaccagtacaaatcactgttagaggaagtggacaattttcgggattacactctatttcatcattgcaatataaagcataagc |
215 |
Q |
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| T |
15147112 |
agcacatgcacatgttatcaccagtacaaatcactgtcagaggaagtggacaattttcgggattacactctatttcatcattgcaatataaagcataagc |
15147211 |
T |
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| Q |
216 |
tgcaattcaaaacataataaataattgttaatgatgaaatattatgcataagaaaaattgaaaaggttaagtgaaaaggcttactagcttttacgttgcc |
315 |
Q |
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| T |
15147212 |
tgcaattcaaaacataataaataattg--agggatgaaatattatgcataagaaaaattgaaagggttgagtgaaaaggcttactagcgcttacgttgcc |
15147309 |
T |
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| Q |
316 |
tac--agnnnnnnntagagaaataaagatgatcataacataaaaagacttaaatatttcagacataattttctcctttttatgtaatcaacatttcttgt |
413 |
Q |
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||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
15147310 |
tacaaaaaaaaaaatagagaaataaagatgatcataatataaaaagacttaaatatttcggacatatttttctcctttttatgtaatcaacatttcttgt |
15147409 |
T |
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| Q |
414 |
tattcttaatttatattgagatttgttag |
442 |
Q |
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| T |
15147410 |
tattcttaatttatattgagatttgttag |
15147438 |
T |
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