View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_18 (Length: 439)
Name: NF19097_high_18
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 115024 - 114620
Alignment:
| Q |
12 |
acagaacagtgctttcattttgtttgatatatattgaatagtatcatttggatttggtaggactttccttctccctcaccaaaaactcgttacaagccaa |
111 |
Q |
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| T |
115024 |
acagaacagtgctttcattttgtttgatatatattgaatagtatcatttggatttggtaggactttccttctcccttaccaaaaactcgttacaagccaa |
114925 |
T |
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| Q |
112 |
acaaattaattactcctttgttttaatgagaagnnnnnnnn-gggcacattttcttttccattacnnnnnnngtttgtactattattaggtgtatagctc |
210 |
Q |
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| T |
114924 |
acaaattaattactcctttgttttaatgagaaaaaaaaaaaagggcacattttcttttccattactttttttgtttgtactattattaggtgtatagctc |
114825 |
T |
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| Q |
211 |
ctgctgctatttttactgattcatcataatggtcacgtgtagaaggaaggaaggaagctgctatagtcatctgcctatgtcccttgtaaaaatgttggga |
310 |
Q |
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| T |
114824 |
ctgctgctattt--actgattcatcataatggtcacgtgtagaaggaaggaaggaagctgctatagtcatctgcctatgtcccttgtaaaaatgttggga |
114727 |
T |
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| Q |
311 |
aattgacaaatggcgtacatagcgacataaaatttgaataagatagcgacagaagatgaggagtggggataactc-aaactaaacacttaccacagtatg |
409 |
Q |
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| T |
114726 |
aattgacaaatggcgtacatagcgacataaaatttgaataagatagcgacagaagatgaggagtggggataactcaaaactaaacacttac--cagtatg |
114629 |
T |
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| Q |
410 |
tgtgtgtgg |
418 |
Q |
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| T |
114628 |
tgtgtgtgg |
114620 |
T |
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Back To:
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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 13433616 - 13433667
Alignment:
| Q |
92 |
aaaaactcgttacaagccaaacaaattaattactcctttgttttaatgagaa |
143 |
Q |
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| T |
13433616 |
aaaaactcgttagaagccaaacaaattaattactgtattgttttaatgagaa |
13433667 |
T |
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