View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_27 (Length: 395)
Name: NF19097_high_27
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 34548026 - 34548397
Alignment:
| Q |
18 |
tctccaactttgtaatagaaaaacgtgagactttttggaacaatatcattttcatttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatct |
117 |
Q |
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| T |
34548026 |
tctccaactttgtaatagaaaaacgtgagactttttggaacaatatcattttcatttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatct |
34548125 |
T |
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| Q |
118 |
tttgaaagtaagaatttccaacacgaggtgcaccaaatgcaaatgttgtaactggacatgctttttgaggttgcccttttggcatgttgaatttattagc |
217 |
Q |
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| T |
34548126 |
tttgaaagtaagaatttccaacacgaggtgcaccaaatgcaaatgttgtaactggacatgctttttgaggttgctcttttggcatgttgaatttattagc |
34548225 |
T |
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| Q |
218 |
aactatatccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtatagctccacagg--tt |
315 |
Q |
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| T |
34548226 |
aactatatccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtatagctccacaagtctg |
34548325 |
T |
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| Q |
316 |
ctg--ctcgttcaggacctttatatttgtcacattacaaatattagaaatccaaacttcccatcatattcat |
385 |
Q |
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| T |
34548326 |
ctgatctcgttcaggaccttaatatttgtcacattacaaatattagaaatccaaacttcccatcatattcat |
34548397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 72 - 358
Target Start/End: Original strand, 34556573 - 34556863
Alignment:
| Q |
72 |
tttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatcttttgaaagtaagaatttccaacacgaggtgcaccaaatgcaaatgttgtaactg |
171 |
Q |
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| T |
34556573 |
tttcgaataaacaatgctctcaaatcattgttgtcggagaaaatcttttcaaagttagaatttccaacacgaggtgaaccaaatgcaaataatgtgactg |
34556672 |
T |
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| Q |
172 |
gacatgctttttgaggttgcccttttggcatgttgaatttattagcaactatatccactgaacttatagttgcaagtgcaccacccaaactgtgtccagt |
271 |
Q |
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| T |
34556673 |
gacatgttttttgaggttgcccttttggtatgttgaatttattagcaactatatccatagagcttatagttgcaagtgcaccacccaagctgtgtcccgt |
34556772 |
T |
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| Q |
272 |
tacagttatgctaatttcttcattcttgtatagctccacaggttctg-----ctcgttcaggacctttatatttgtcacattacaaatatta |
358 |
Q |
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| T |
34556773 |
tacagttatgctaatttcttcattcttatatagctccacaag-tctgctaatctcgtttaagacctttataattgccacattacaaatatta |
34556863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 4674847 - 4674924
Alignment:
| Q |
225 |
tccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtat |
302 |
Q |
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||||||| | ||| |||||||| |||| |||| |||||||| || |||| ||||||||| |||||||||||||||||| |
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| T |
4674847 |
tccactgcatttagagttgcaattgcagcacctaaactgtgacctgttatagttatgcttatttcttcattcttgtat |
4674924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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