View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_28 (Length: 395)
Name: NF19097_high_28
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 7844592 - 7844206
Alignment:
| Q |
1 |
actcttcataagtaaattaattggttaatccaaataaaacaactcggaataagataataagaaaagtaaaagtgggggaatgtgctaactactctcctgg |
100 |
Q |
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| T |
7844592 |
actcttcgtaagtaaattaattggttaatccaaataaaacaactcggaataagataataagaaaagtaaaagtgggggaatgtgctaactactctcctgg |
7844493 |
T |
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| Q |
101 |
aaattagattttcagagattaagaatcatgcatgtgtatactatacacatatgtccactactaaagattctttatttagtgaccaattttccaaacctta |
200 |
Q |
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| T |
7844492 |
aaattagattttcagaaattaagaatcatgcatgtgtatactatacacatatgtccactactaaaaattctttatttagtgaccaattttccaaacctta |
7844393 |
T |
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| Q |
201 |
aatgtgtgtttgcaattattattgcagaagtttggggttggaaaatgatgatgccactcaaaacatgaggcataaagctgaagaagagaccaatgccatt |
300 |
Q |
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| T |
7844392 |
aatgtgtgtttgcaattattattgcagaagtttggggttggaaaataatgatgccactcaaaacatgaggcataaagctgaagaagagaccaatgccatt |
7844293 |
T |
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| Q |
301 |
gatgatgttgccaaacagtttgccgcagaaatttcccagtaatcttctctcttttcatcaatatataataactacacttttcttctc |
387 |
Q |
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| T |
7844292 |
gatgatgttgccaaacagtttgccgcagaaatttcccagtaatcttctctcttttcatcaatatataataactacacttttcttctc |
7844206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 284
Target Start/End: Complemental strand, 7843423 - 7843333
Alignment:
| Q |
194 |
aaccttaaatgtgtgtttgcaattattattgcagaagtttggggttggaaaatgatgatgccactcaaaacatgaggcataaagctgaaga |
284 |
Q |
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| T |
7843423 |
aaccttaaatgtgtgtttgcaattattgttgcagaagtttggggttagaaaatgatgattgcacccaaaacatgaagtataaagctgaaga |
7843333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 7843731 - 7843596
Alignment:
| Q |
9 |
taagtaaattaattggttaatccaaataaa--acaactcggaataagataataagaaaagtaaaagtggggga-atgtgctaactactctcctggaaatt |
105 |
Q |
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| T |
7843731 |
taagtaaatcaattggttaatccaaataaacaacaacttggaataagataacaagaaaagtaaaagttgaggatatgtgctagttactctcctggaagtt |
7843632 |
T |
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| Q |
106 |
agattttcagagattaagaatcatgcatgtgtatac |
141 |
Q |
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| T |
7843631 |
acgatttgagaaattaagaattatgcatgtgtatac |
7843596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 7845588 - 7845522
Alignment:
| Q |
277 |
gctgaagaagagaccaatgccattgatgatgttgccaaacagtttgccgcagaaatttcccagtaat |
343 |
Q |
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| T |
7845588 |
gctgaagaagagaccaatgccaaagatgaggatgtcaaacagtttgctgcagaaatcttccagtaat |
7845522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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