View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19097_high_30 (Length: 378)
Name: NF19097_high_30
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_30 |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 43 - 356
Target Start/End: Original strand, 759 - 1072
Alignment:
| Q |
43 |
atttaaaacaaatgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgt |
142 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
759 |
atttaaaaaaaatgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgt |
858 |
T |
|
| Q |
143 |
tcttgttttatatttctctaatagtgtttgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagag |
242 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
859 |
tcttgttttatatttctttaatagtgtttgtgaaaatctaggaacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagag |
958 |
T |
|
| Q |
243 |
aaaatttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaata |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
959 |
aaaatttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaata |
1058 |
T |
|
| Q |
343 |
acacccaatacagc |
356 |
Q |
| |
|
|||||||||||||| |
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|
| T |
1059 |
acacccaatacagc |
1072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 47 - 356
Target Start/End: Complemental strand, 33879190 - 33878881
Alignment:
| Q |
47 |
aaaacaaatgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttctt |
146 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
33879190 |
aaaaaaaatgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttctt |
33879091 |
T |
|
| Q |
147 |
gttttatatttctctaatagtgtttgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaa |
246 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
33879090 |
gttttatatttctttaatagtgtttgtgaaaatctaggaacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaa |
33878991 |
T |
|
| Q |
247 |
tttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacac |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33878990 |
tttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacac |
33878891 |
T |
|
| Q |
347 |
ccaatacagc |
356 |
Q |
| |
|
|||||||||| |
|
|
| T |
33878890 |
ccaatacagc |
33878881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 43 - 356
Target Start/End: Complemental strand, 13869807 - 13869501
Alignment:
| Q |
43 |
atttaaaacaaatgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgt |
142 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
13869807 |
atttaaaaaaaatgaaaatagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgt |
13869708 |
T |
|
| Q |
143 |
tcttgttttatatttctctaatagtgtttgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagag |
242 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
13869707 |
tcttgttttatatttctctattagtgtttctgaaaatctaggaacat-------aaccttaaaaaaacattcagccaccatatctcaactcatggaagag |
13869615 |
T |
|
| Q |
243 |
aaaatttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaata |
342 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13869614 |
aaaatttcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactattttaatagaatttgacccattgctcgattggattgcaata |
13869515 |
T |
|
| Q |
343 |
acacccaatacagc |
356 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13869514 |
acacccaatacagc |
13869501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 47 - 309
Target Start/End: Complemental strand, 27641406 - 27641144
Alignment:
| Q |
47 |
aaaacaaatgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttctt |
146 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
27641406 |
aaaaaaaatgaaaatagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttctt |
27641307 |
T |
|
| Q |
147 |
gttttatatttctctaatagtgtttgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaa |
246 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |
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|
| T |
27641306 |
gttttatatttctctattagtgtttctgaaaatctaggaacatgttcatcaaccttaaaaaaacattcacccaccatatgtcaactcatggaagagaaaa |
27641207 |
T |
|
| Q |
247 |
tttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaata |
309 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27641206 |
tttcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactattttaata |
27641144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 54 - 355
Target Start/End: Original strand, 29735197 - 29735504
Alignment:
| Q |
54 |
atgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttat |
153 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29735197 |
atgaaaatagaaacagaaccatcgtcattcttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgtttaat |
29735296 |
T |
|
| Q |
154 |
atttctctaatagtgtttgtgaaaatctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaac |
253 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29735297 |
atttctctaatagtgtttatgaaaatctaggaacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaac |
29735396 |
T |
|
| Q |
254 |
atttcaagagatttgaatttccaaatgc------aaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacc |
347 |
Q |
| |
|
||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
29735397 |
cttttaagagatctgaatttccaaatgcatacaaaaagttattaaaactaactattttaatagaatttaacccattgctcgattggattgcaataacacc |
29735496 |
T |
|
| Q |
348 |
caatacag |
355 |
Q |
| |
|
|||||||| |
|
|
| T |
29735497 |
caatacag |
29735504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 47 - 356
Target Start/End: Original strand, 49850906 - 49851221
Alignment:
| Q |
47 |
aaaacaaatgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttctt |
146 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49850906 |
aaaaaaaatgaaaatagaaacataaccatcgtcatccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttctt |
49851005 |
T |
|
| Q |
147 |
gttttatatttctctaatagtgtttgtgaaaatctaggaacatgttc---atcaaccttnnnnnnncattcagccaccatatctcaactcatggaagaga |
243 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||| |
|
|
| T |
49851006 |
gttttatatttctctaatagtatttctgaaaatctaggaacatgttcaatatcaaccttaaaaaaacattcggccatcatatctcaactcatggaagaga |
49851105 |
T |
|
| Q |
244 |
aaatttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgc---aa |
340 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || |
|
|
| T |
49851106 |
aaatttcaaccttttaagagatctgaatttccaaatgcaaagttattaaaactaactattttaatagaatttgacccattgctcaattggattgcaataa |
49851205 |
T |
|
| Q |
341 |
taacacccaatacagc |
356 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
49851206 |
taacacccaatacagc |
49851221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 38460890 - 38460745
Alignment:
| Q |
14 |
aaatcatgacatatcattattannnnnnnatttaaaacaaa-tgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtttta |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38460890 |
aaatcatgacatatcattatttatttttaatttaaaaaaaaatgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtctta |
38460791 |
T |
|
| Q |
113 |
ttttgaatcgctcataaactgaatctatgttcttgttttatatttc |
158 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38460790 |
ttttgaatcgctcataaactaaatctatgttcttgttttatatttc |
38460745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 38460749 - 38460700
Alignment:
| Q |
246 |
atttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaac |
295 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38460749 |
atttcaacctttcaagagatttgaatttccaaatgcaaagttattaaaac |
38460700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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