View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_32 (Length: 376)
Name: NF19097_high_32
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 25656254 - 25656604
Alignment:
| Q |
19 |
ctgttcgtgtgcattggcatataaaagacaattacaaggattattggcgtgtaaagatcgcaatcatcaacttcaagtatagattgaattacacacaatg |
118 |
Q |
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| T |
25656254 |
ctgttcgtgtgcattggcatataaaagacaattacaaggattattggcgtgtaaagattgcaatcatcaacttcaaatatagactgaattacacacaatg |
25656353 |
T |
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| Q |
119 |
gggtcttgttgtgcaacaccctaatctcagtaatgttacccaagtctatagttttgaatacatgccacttcttccttatgaagccataagtaagttcttc |
218 |
Q |
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| T |
25656354 |
gggtctagttgtgcaacaccctaatctcagtaatgttacccaagtctatagttttgaatacatgccacttcttccctatgaagccataagtaagttcttc |
25656453 |
T |
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| Q |
219 |
aaatattagacactgtttatattttgttaacttgcattaccaacagaaattaacagaacaagaaaatgaatttcttatctgacttcgacgtctctaatac |
318 |
Q |
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| T |
25656454 |
aaatattagacactgtttatattttgttaacttgcattatcaacagaaattaacagaacaagaaaatgaatttcttatctaacttcgacgtctc--gtac |
25656551 |
T |
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| Q |
319 |
aaattcggattgcatgcagtcacaattgttgcattgcaatcaacatgtctgtg |
371 |
Q |
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| T |
25656552 |
aaatttggattgcatgcagtcacaattgttgcattgcaatcaacatgtttgtg |
25656604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 25659350 - 25659541
Alignment:
| Q |
25 |
gtgtgcattggcatataaaagacaattacaaggattattggcgtgtaaagatcgcaatcatcaacttcaagtatagattgaattacacacaatggggtct |
124 |
Q |
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| T |
25659350 |
gtgtgcatcggcatataaaatacaactataagggttattggcgtgtcaagattaccatcttcaacttcgaatatagaatgaactacacacagtggcgtct |
25659449 |
T |
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| Q |
125 |
tgttgtgcaacaccctaatctcagtaatgttacccaagtctatagttttgaatacatgccacttcttccttatgaagccataagtaagttctt |
217 |
Q |
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| T |
25659450 |
tgttgtgcaacacccgaatctcaacaatgtttcccaagtttatagctttaattacatgccattccttcc-tatgaatccataagtaagttctt |
25659541 |
T |
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