View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_36 (Length: 341)
Name: NF19097_high_36
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 1997915 - 1997602
Alignment:
| Q |
14 |
agaaggatagtaagatggcagtccaactcccacattggtttcttcaacnnnnnnngagtcacacattacatgagatatggtctgtaaaggtgtttataat |
113 |
Q |
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| T |
1997915 |
agaaggatagtaagatggcagtccaactcccacattggtttcttcaacaaaaaaagagtcacacattacatgagatatggtctgtaaaggtgtttataat |
1997816 |
T |
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| Q |
114 |
ttggtggacagtcctcacctctacaagccaatttttgcaaggattggtttagtcccaacccaaaattctaagattgtatcagggcctatcaatgacttgt |
213 |
Q |
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| T |
1997815 |
ttggtggacagtcctcacctctacaagccaatttttgcaaggattggtttagtcccaacccaaaattctaagattgtatcagggcctatcaatgacttgt |
1997716 |
T |
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| Q |
214 |
tgggccacatgctatcggaatcagaccactcggaccacaatttagatgcccagtcttgggcataagggtgtgtgttaagaatctcatattgaatgagata |
313 |
Q |
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| T |
1997715 |
tgggccacatgctatcggaatcagaccactcggaccacgatttagatgcccagtcttgggcataagggtgtgtgttaagaatctcatattgaatgagata |
1997616 |
T |
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| Q |
314 |
tcacatgaacatgt |
327 |
Q |
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| T |
1997615 |
tcgcatgaacatgt |
1997602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 114 - 314
Target Start/End: Complemental strand, 2037452 - 2037258
Alignment:
| Q |
114 |
ttggtggacagtcctcacctctacaagccaatttttgcaaggattggtttagtcccaacccaaaattctaagattgtatcagggcctatcaatgacttgt |
213 |
Q |
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| T |
2037452 |
ttggtggatagtccttacccctacaagccggttttagtaaggattgttttagactcaacccaaaattctaagattatatcagagcctatccaagatctgt |
2037353 |
T |
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| Q |
214 |
tgggccacatgctatcggaatcagaccactcggaccacaatttagatgcccagtcttgggcataagggtgtgtgttaagaatctcatattgaatgagata |
313 |
Q |
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| T |
2037352 |
tgggccacacgct------atcagaccactcgagccacactttagatgtctagacttgggcataagggcgtgtgttaagaatcccacattgaatgagata |
2037259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 34124237 - 34124287
Alignment:
| Q |
263 |
ccagtcttgggcataagggtgtgtgttaagaatctcatattgaatgagata |
313 |
Q |
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| T |
34124237 |
ccagtcttgggcatacgggtgtgtgttaagaatcccacatcggatgagata |
34124287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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