View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_40 (Length: 331)
Name: NF19097_high_40
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 49 - 315
Target Start/End: Complemental strand, 38467112 - 38466850
Alignment:
| Q |
49 |
gatgcatacaccaaacctcaacacaacttatttctcattatctttgttaaatcaactatcaacacaaatcaaagtcatattctcaaatctcatgacaaga |
148 |
Q |
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| T |
38467112 |
gatgcatacaccaaacctcaacacaacttatttctcattatctttgttaaatcaactatcaacacaaatcaaagtcatattctcaaatctcatgacaaga |
38467013 |
T |
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| Q |
149 |
agaatagtaaacttttattaataaaaactattcaaaaccttaatgacaataaacatttccctccttctagagataatgattgaatatgtctcagattgac |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38467012 |
agaatagtaaacttttattaataaaaactattcaaaaccttaatgacaataaacatttccctccttctagagataatgattgaatatgtctcagattgac |
38466913 |
T |
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| Q |
249 |
aaaaataatagaaaattaatatatatgcacatcaaaccttaactcaattcattgttttcgttgaatt |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38466912 |
aaaaataatagaaaatta----atatgcacatcaaaccttaactcaattcattgttttcgttgaatt |
38466850 |
T |
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