View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_43 (Length: 311)
Name: NF19097_high_43
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 290086 - 289788
Alignment:
| Q |
1 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgactacttcggtcatgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
290086 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgcttttccccaaatttttgtgtcatttacgactacttcggtcatgt |
289987 |
T |
|
| Q |
101 |
accataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttc |
200 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
289986 |
accataaataatcactagctccagcggtaacattcttttgatttaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcattggttc |
289887 |
T |
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| Q |
201 |
ggatgcccattcccacttgagtgtgtttcctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatt |
299 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
289886 |
ggatgcccattcccacttgagtgtgtttcctaatgaacaagtacacaacaatgctaaacatgcagtaagaaatatactaaaccttggattagacatatt |
289788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 279641 - 279432
Alignment:
| Q |
1 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgactacttcggtcatgt |
100 |
Q |
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|||||||||||| || ||||||||||| ||||| |||||| || |||| | |||||||||||||| | ||||| ||||||||||| ||||||||||||| |
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| T |
279641 |
aatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctttcccccaagtgtttgtatcatttacgacaacttcggtcatgt |
279542 |
T |
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| Q |
101 |
accataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttc |
200 |
Q |
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| T |
279541 |
accacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtc |
279442 |
T |
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| Q |
201 |
ggatgcccat |
210 |
Q |
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||||| |||| |
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| T |
279441 |
ggatgtccat |
279432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 278179 - 278110
Alignment:
| Q |
230 |
ctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatt |
299 |
Q |
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||||||||||||| ||||||||| ||| |||||| |||||||| | | |||| ||| |||||||||||| |
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| T |
278179 |
ctgatgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacatagcattagacatatt |
278110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 24525140 - 24524842
Alignment:
| Q |
1 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgactacttcggtcatgt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| || || ||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24525140 |
aatccattaatatatgaataaataatagggccttttgcattcacttgcagtgttgatttcccccaaacagttgtgtcatttacgactacttcggtcatgt |
24525041 |
T |
|
| Q |
101 |
accataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttc |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
24525040 |
accataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctggtaaggtgtcttgcattggttc |
24524941 |
T |
|
| Q |
201 |
ggatgcccattcccacttgagtgtgtttcctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatt |
299 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
24524940 |
agatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagacatatt |
24524842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 24531813 - 24531515
Alignment:
| Q |
1 |
aatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccccaaatttttgtgtcatttacgactacttcggtcatgt |
100 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||||| || || ||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24531813 |
aatccattaatatacgaataaataatagggccttttgcattcacttgcagtgttgatttcccccaaacggttgtgtcatttacgactacttcggtcatgt |
24531714 |
T |
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| Q |
101 |
accataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttc |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
24531713 |
accataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtcccttggcctagtaaggtgtcttgcattggttc |
24531614 |
T |
|
| Q |
201 |
ggatgcccattcccacttgagtgtgtttcctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatt |
299 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
24531613 |
agatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagacatatt |
24531515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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