View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19097_high_48 (Length: 292)
Name: NF19097_high_48
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 3691671 - 3691945
Alignment:
| Q |
1 |
ctataactaagatatgaagtgttgactttctctaaattaatgacagaatctagattctcttgttgcagaagaggtgagattctatagcagaagaaaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3691671 |
ctataactaagatatgaagtgttgactttctctaaatttatgactgaatctagattctcttgttgcagaagaggtgagattctatagcagaagaaaattc |
3691770 |
T |
|
| Q |
101 |
taaagaaaagaaatagttttacatgtggcaagttggtatgttattttttccttcaaaaattgcatatgctgctgcaccttgcaagcaagcatcgtagcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
3691771 |
taaagaaaagaaatagttttacatgtggcaagttggtatgttattttttccttcaaaaattgcata---tgctgcaccttgcaagcaagcatcgtggcga |
3691867 |
T |
|
| Q |
201 |
cactagatgcaaatccaaatgcagagaacaggttgcaattaaggttagttaggtgagtgtgatcctcttaagcaaattg |
279 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3691868 |
cactagatgcaaa-ccaaatgcagagaacaggttgcaattaaggttagttatgtgagtgtgatcctcttaagcaaattg |
3691945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University