View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_52 (Length: 276)
Name: NF19097_high_52
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_52 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 7023445 - 7023194
Alignment:
| Q |
8 |
gacatcatcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7023445 |
gacatcatcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatctttcgtattttcttcctct |
7023346 |
T |
|
| Q |
108 |
aacagagtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaataactgtcgtatt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7023345 |
aacagagtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaaaaactgtcgtatt |
7023246 |
T |
|
| Q |
208 |
tagaatgtagtctacggtaaacttcttcagcaagagttgttttaccaatacc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7023245 |
tagaatgtagtctacggtaaacttcttcagcaagagttgttttaccaatacc |
7023194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 7075419 - 7075672
Alignment:
| Q |
8 |
gacatcatcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctct |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||| ||||||||| |||||||| || ||| |||||| |
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| T |
7075419 |
gacatcatcaagaacaataagaaccttcatgcggctaagccttttcttaaccaaaggtggtaatccatttatcatgtcatctttcaaatcttcatcctct |
7075518 |
T |
|
| Q |
108 |
aacagagtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaataactgtcgtatt |
207 |
Q |
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|| |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| || | || |||| |
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| T |
7075519 |
aatagagtggataaaagcttttttcttaacctcaaactgtttgtgccatatctttctgattcttctcttacattagccataaaacaacaagtttcatatt |
7075618 |
T |
|
| Q |
208 |
tagaatgtagtctacggtaaacttcttcagcaagagttgttttaccaatacctg |
261 |
Q |
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|||| ||||||| || | ||||||||||||| |||||||||||||||||||| |
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| T |
7075619 |
cagaacgtagtcttcgaaatacttcttcagcaatagttgttttaccaatacctg |
7075672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 7036542 - 7036292
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctcta |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||| ||||||||| |||||||| || ||||||||||| |
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| T |
7036542 |
acatcatcaagaacaataagaaccttcatgcggcttagccttttcttaaccaaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctcta |
7036443 |
T |
|
| Q |
109 |
acagagtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaataactgtcgtattt |
208 |
Q |
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| |||||||||||||| |||||||||| |||| ||||||| | | ||| ||||||||||||||||||||||||||| ||| || |||| |||||||| |
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| T |
7036442 |
atagagtggataaaagattttttcttagcctcaaactgtttgttctacatccttctgattcttctcttacattagccataaaataacaactttcgtattt |
7036343 |
T |
|
| Q |
209 |
agaatgtagtctacggtaaacttcttcagcaagagttgttttaccaatacc |
259 |
Q |
| |
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|||| |||||||||| | ||||||||||||| |||||||||||||||||| |
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|
| T |
7036342 |
agaacgtagtctacgaaatacttcttcagcaatagttgttttaccaatacc |
7036292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 7030827 - 7030586
Alignment:
| Q |
15 |
tcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacagag |
114 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |||| ||||| |||| |||||||||| |||||||| ||||||||||| ||| || | |
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| T |
7030827 |
tcaagaacaataagaaccttcatacggtgaagccttttcttaaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaataggg |
7030728 |
T |
|
| Q |
115 |
tggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctcttacattagccatgaaacaataactgtcgtatttagaatg |
214 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||||| ||| || |||| ||||| |||||| | |
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| T |
7030727 |
tggataaaataatttttcttaacctcaaactgtttgttccacatctttctgattcttctcttacattagccataaaataacaactttcgtacttagaacg |
7030628 |
T |
|
| Q |
215 |
tagtctacggtaaacttcttcagcaagagttgttttaccaat |
256 |
Q |
| |
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||||||||| | ||||||||||||| ||||||||||||||| |
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| T |
7030627 |
tagtctacgaaatacttcttcagcaatagttgttttaccaat |
7030586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 3817516 - 3817550
Alignment:
| Q |
8 |
gacatcatcaagaacaataagaaccttcatgcggc |
42 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
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|
| T |
3817516 |
gacatcatcaagaacgataagaaccttcatgcggc |
3817550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 3919948 - 3919914
Alignment:
| Q |
8 |
gacatcatcaagaacaataagaaccttcatgcggc |
42 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
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| T |
3919948 |
gacatcatcaagaacgataagaaccttcatgcggc |
3919914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 3933172 - 3933138
Alignment:
| Q |
8 |
gacatcatcaagaacaataagaaccttcatgcggc |
42 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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|
| T |
3933172 |
gacatcatcaagaacaataagaactttcatgcggc |
3933138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 3954610 - 3954577
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcatgcggc |
42 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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|
| T |
3954610 |
acatcatcaagaacaataagaaccttcatacggc |
3954577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 4002220 - 4002253
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcatgcggc |
42 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
4002220 |
acatcatcaagaacaataagaaccttcatacggc |
4002253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 4009917 - 4009945
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcat |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
4009917 |
acatcatcaagaacaataagaaccttcat |
4009945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 13397871 - 13397899
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcat |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
13397871 |
acatcatcaagaacaataagaaccttcat |
13397899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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