View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_6 (Length: 536)
Name: NF19097_high_6
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Original strand, 48566633 - 48567100
Alignment:
| Q |
16 |
attaaggatcacaatatgagaatttgacttagaacccacactatacataacagtggatattaaaattttattagagtctcacattactcaggttcagaga |
115 |
Q |
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| T |
48566633 |
attaaggatcacaatatgggaatttgacttagaacccacactatacataacggtggatattaaaattttattagagtctcacattactcaggttcagaga |
48566732 |
T |
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| Q |
116 |
cagttgaatgcatacatgtatttaaatacctttattctttgagttgacttttacaatgagattcatgtttatttaacaagttatacggttgtttcaaagt |
215 |
Q |
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| T |
48566733 |
cggttgaatacatacatgtatttaaatacctttattctttgagttgatttttacaatgagattcatgtttatttaacaagttatacggttgtttcaaagt |
48566832 |
T |
|
| Q |
216 |
ttaaagttccaaatctcttcctcgaaacgaaaatgtttaaaatctcaattatttaagttcaaattccccactgtgccctcatggaacccgcgaaacatag |
315 |
Q |
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| T |
48566833 |
ttaaagttccaaatctcttcctcaaaacgaaaatgtttaaaatctcaattatttaagttcaaattccccactgtgccctcatggaacccgcgaaatatag |
48566932 |
T |
|
| Q |
316 |
tttgagacttagtaagtgagttgaaattttggcaattgaatttccatcatcatcaagcaatttggtaccagcgtcgttttcatttttcatagctataact |
415 |
Q |
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| T |
48566933 |
tttgagacttagtaagtgagttgaaattttggcaattgaatttccatcatcatcaagcaatttggtaccagtgtcgttttcatttttcatagctataact |
48567032 |
T |
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| Q |
416 |
tctgagtgggatta-gatcatttgatgacaataagttaattgattaacatttccccgccattccttcc |
482 |
Q |
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| T |
48567033 |
tctgagtgggattaggatcatttgatgactataagttcattgattaacatttccctgccgttccttcc |
48567100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 582260 - 582313
Alignment:
| Q |
140 |
aatacctttattctttgagttgacttttacaatgagattcatgtttatttaaca |
193 |
Q |
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| T |
582260 |
aatacctttatcctttgagttaacttttaagatgagattcaagttcatttaaca |
582313 |
T |
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