View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_68 (Length: 252)
Name: NF19097_high_68
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_68 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 31012867 - 31013106
Alignment:
| Q |
16 |
catttttatgatggtatagttgacattgataatcttaaaagtggtttgaataacgggtttgaggtgaattatagtgtgaaagaggaatgtgcaaagtgtt |
115 |
Q |
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| T |
31012867 |
catttttatgatggtatagttgacattgataatcttaaaagtggtttgaataatgggtttgaggtgaattatagtgtgaaagaggaatgtgcaaagtgtt |
31012966 |
T |
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| Q |
116 |
tgggaagtgaag---gagattgtaaattgaagtccaatagggatattgagaaacatgttaactcctcttgctattatgataattgttcagatggatctat |
212 |
Q |
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| T |
31012967 |
tgggaagtgaagaaggagattgtaaatggaagtccaatagggatattgagaaacatgttaactcctcttgctattatgataattgttcagatggatctat |
31013066 |
T |
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| Q |
213 |
tcatttttccacacaacaatgttctaatcacagtatgttt |
252 |
Q |
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| T |
31013067 |
tcatttttccacacaacaatgttctaatcacagtatgttt |
31013106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 30959082 - 30959282
Alignment:
| Q |
48 |
tcttaaaagtggtttgaataacgggtttgaggtgaattatagtgtgaaagaggaatgtgcaaagtgtttgggaagtgaagga---gattgtaaattgaag |
144 |
Q |
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| T |
30959082 |
tcttgaaaatggtttggataaggggtttgagttgaattatactatgaaagaggaatgctcaaggtgtttgggaagtgaaggaggagattgtaaatgggag |
30959181 |
T |
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| Q |
145 |
tccaatagggatattgagaaacatgttaactcctcttgctattatgataattgttcagatggatctattcatttttccacacaacaatgttctaatcaca |
244 |
Q |
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| T |
30959182 |
agcaataatgatattgagaaacatgtaaagtcctcgtgctattatgatgattgtttagatggatctgttgattcttccacacaacactgttctaatcaca |
30959281 |
T |
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| Q |
245 |
g |
245 |
Q |
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| T |
30959282 |
g |
30959282 |
T |
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