View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19097_high_74 (Length: 251)

Name: NF19097_high_74
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19097_high_74
NF19097_high_74
[»] chr7 (11 HSPs)
chr7 (1-190)||(41812069-41812258)
chr7 (28-190)||(41706628-41706790)
chr7 (88-190)||(32089264-32089366)
chr7 (91-190)||(32096737-32096836)
chr7 (88-190)||(32093021-32093123)
chr7 (93-190)||(39128491-39128588)
chr7 (93-190)||(39478457-39478554)
chr7 (88-190)||(32087909-32088011)
chr7 (147-185)||(32089075-32089113)
chr7 (141-181)||(1114780-1114820)
chr7 (94-130)||(22785386-22785422)
[»] chr6 (5 HSPs)
chr6 (28-190)||(26217233-26217395)
chr6 (93-172)||(7618947-7619026)
chr6 (90-173)||(18871931-18872015)
chr6 (91-166)||(6845968-6846043)
chr6 (93-152)||(11187905-11187964)
[»] chr8 (4 HSPs)
chr8 (88-190)||(21634805-21634907)
chr8 (116-191)||(5515537-5515612)
chr8 (96-134)||(10583097-10583135)
chr8 (103-135)||(32735660-32735692)
[»] chr3 (8 HSPs)
chr3 (88-190)||(48837982-48838084)
chr3 (89-190)||(38044520-38044621)
chr3 (89-189)||(50152350-50152450)
chr3 (89-190)||(50903982-50904083)
chr3 (88-189)||(50916154-50916259)
chr3 (92-129)||(147941-147978)
chr3 (102-131)||(50823399-50823428)
chr3 (102-131)||(50852433-50852462)
[»] chr1 (7 HSPs)
chr1 (91-190)||(31141947-31142046)
chr1 (104-183)||(30272473-30272551)
chr1 (125-190)||(27402434-27402499)
chr1 (104-174)||(27981698-27981768)
chr1 (93-133)||(34470026-34470066)
chr1 (151-185)||(43428941-43428975)
chr1 (93-130)||(6760094-6760131)
[»] scaffold0856 (1 HSPs)
scaffold0856 (94-183)||(4895-4984)
[»] chr2 (3 HSPs)
chr2 (112-191)||(32271342-32271421)
chr2 (92-190)||(43741443-43741541)
chr2 (113-191)||(33815396-33815475)
[»] chr4 (4 HSPs)
chr4 (136-185)||(8762982-8763031)
chr4 (111-185)||(7777910-7777985)
chr4 (111-147)||(7772341-7772377)
chr4 (111-185)||(7792702-7792777)
[»] chr5 (1 HSPs)
chr5 (93-130)||(8058720-8058757)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 41812069 - 41812258
Alignment:
Q  1 tgttgagtgcgtgtacttgttacttatgtcccacatggcttagatattatgcatattcaatgtttatatatcctcatagagcactatggcttgtcccttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  41812069 tgttgagtgcgtgtacttgttacttatgtcccacatggcttagatattatgcatattcaatgtttatatatcctcatagagcactgtggcttgtcccttc 41812168  T
Q  101 ggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaa 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41812169 ggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 41812258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 41706790 - 41706628
Alignment:
Q  28 gtcccacatggcttagatattatgcatattcaatgtttatatatcctcatagagcactatggcttgtccctttggggacatccgataaaattggaacgat 127  Q
    ||||||||| ||||| || |||||||| |||| |||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  41706790 gtcccacatcgcttaaatgttatgcatcttcagtgtttatatatcgtcacagagcactatgacttgtcccttcggggacatccgataaaattggaacgat 41706691  T
Q  128 acagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41706690 acagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 41706628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 32089366 - 32089264
Alignment:
Q  88 ggcttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtcc 187  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32089366 ggcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcc 32089267  T
Q  188 aaa 190  Q
    |||    
T  32089266 aaa 32089264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 32096836 - 32096737
Alignment:
Q  91 ttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaa 190  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32096836 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 32096737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 32093123 - 32093021
Alignment:
Q  88 ggcttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtcc 187  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  32093123 ggcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgtgcaaggatgacacgcacaaatcgagaaatggtcc 32093024  T
Q  188 aaa 190  Q
    |||    
T  32093023 aaa 32093021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 39128588 - 39128491
Alignment:
Q  93 gtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaa 190  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39128588 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 39128491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 39478457 - 39478554
Alignment:
Q  93 gtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaa 190  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39478457 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 39478554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 32088011 - 32087909
Alignment:
Q  88 ggcttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtcc 187  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  32088011 ggcttgtcccttcggggacatctgataaaattggaacgatacagagaagattaacatggcccctgcacaaggatgacacgcacaaatcgagaaatggtcc 32087912  T
Q  188 aaa 190  Q
    |||    
T  32087911 aaa 32087909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 32089075 - 32089113
Alignment:
Q  147 cccctgcgcaaggatgacacgcacaaattgagaaatggt 185  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  32089075 cccctgcgcaaggatgacacgcacaaatcgagaaatggt 32089113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 1114780 - 1114820
Alignment:
Q  141 gcatggcccctgcgcaaggatgacacgcacaaattgagaaa 181  Q
    |||||| ||||||||||| |||||||||| |||||||||||    
T  1114780 gcatggtccctgcgcaagaatgacacgcaaaaattgagaaa 1114820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 22785422 - 22785386
Alignment:
Q  94 tccctttggggacatccgataaaattggaacgataca 130  Q
    ||||||||  |||||||||||||||||||||||||||    
T  22785422 tccctttgaagacatccgataaaattggaacgataca 22785386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 26217395 - 26217233
Alignment:
Q  28 gtcccacatggcttagatattatgcatattcaatgtttatatatcctcatagagcactatggcttgtccctttggggacatccgataaaattggaacgat 127  Q
    ||||||||| ||||| || |||||||| |||| |||||||||||| ||| ||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  26217395 gtcccacatcgcttaaatgttatgcatcttcagtgtttatatatcgtcacagagcacaattgcttgtcccttcggggacatccgataaaattggaacgat 26217296  T
Q  128 acagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26217295 acagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 26217233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 7619026 - 7618947
Alignment:
Q  93 gtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 172  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||  || ||||||| ||||||||||||||    
T  7619026 gtcccttcggggacatccgataaaattggaatgatacagagaagattagcatgatccatgcgcaaagatgacacgcacaa 7618947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 18872015 - 18871931
Alignment:
Q  90 cttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccc-tgcgcaaggatgacacgcacaaa 173  Q
    |||||||| ||||||||||| |||||| ||| || |||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  18872015 cttgtcccattggggacatctgataaagttgaaatgatacagacaagattagcatggccccttgcgcaaagatgacacgcacaaa 18871931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 6845968 - 6846043
Alignment:
Q  91 ttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacac 166  Q
    |||| ||||||| ||| ||||||||||||||||||||| | ||||||||| || | ||||||||||||||| ||||    
T  6845968 ttgttcctttggagacttccgataaaattggaacgatataaagaagattaacaggacccctgcgcaaggatcacac 6846043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 11187905 - 11187964
Alignment:
Q  93 gtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctg 152  Q
    ||||||| | |||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  11187905 gtcccttcgaggacgtccggaaaaattggaacgatacagagaagattagcatggcccctg 11187964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 21634907 - 21634805
Alignment:
Q  88 ggcttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtcc 187  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21634907 ggcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcc 21634808  T
Q  188 aaa 190  Q
    |||    
T  21634807 aaa 21634805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 5515537 - 5515612
Alignment:
Q  116 aattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaaa 191  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  5515537 aattggaacgatacagagaagattagcatggcccttgcgcaaagatgacacgcacaaatcgagaaatggtccaaaa 5515612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 10583135 - 10583097
Alignment:
Q  96 cctttggggacatccgataaaattggaacgatacagaga 134  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  10583135 ccttcggggacatccgataaaattgaaacgatacagaga 10583097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 32735660 - 32735692
Alignment:
Q  103 ggacatccgataaaattggaacgatacagagaa 135  Q
    |||||||| ||||||||||||||||||||||||    
T  32735660 ggacatcccataaaattggaacgatacagagaa 32735692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 48837982 - 48838084
Alignment:
Q  88 ggcttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtcc 187  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48837982 ggcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcc 48838081  T
Q  188 aaa 190  Q
    |||    
T  48838082 aaa 48838084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 38044621 - 38044520
Alignment:
Q  89 gcttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtcca 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38044621 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 38044522  T
Q  189 aa 190  Q
    ||    
T  38044521 aa 38044520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 50152350 - 50152450
Alignment:
Q  89 gcttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtcca 188  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50152350 gcttgtccctttggggacatctgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 50152449  T
Q  189 a 189  Q
    |    
T  50152450 a 50152450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 50903982 - 50904083
Alignment:
Q  89 gcttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtcca 188  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| ||    
T  50903982 gcttgtcacttcggggacatccgataaaattggaacgatacagagaagattagcaaggcccctgcgcaaggatgacacgcacaattcgagaaatggttca 50904081  T
Q  189 aa 190  Q
    ||    
T  50904082 aa 50904083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 50916259 - 50916154
Alignment:
Q  88 ggcttgtccctttggggacatccgataaaattggaacgatacagagaagattagc----atggcccctgcgcaaggatgacacgcacaaattgagaaatg 183  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||    ||||||| ||| |||||||||||||||||||||||||||||    
T  50916259 ggcttgtccctttgggaacatccgataaaattggaacgatatagagaagattggcatggatggcccttgcacaaggatgacacgcacaaattgagaaatg 50916160  T
Q  184 gtccaa 189  Q
    ||||||    
T  50916159 gtccaa 50916154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 147941 - 147978
Alignment:
Q  92 tgtccctttggggacatccgataaaattggaacgatac 129  Q
    |||||||| |||||||||||||||||||||||||||||    
T  147941 tgtcccttcggggacatccgataaaattggaacgatac 147978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 50823399 - 50823428
Alignment:
Q  102 gggacatccgataaaattggaacgatacag 131  Q
    ||||||||||||||||||||||||||||||    
T  50823399 gggacatccgataaaattggaacgatacag 50823428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 131
Target Start/End: Complemental strand, 50852462 - 50852433
Alignment:
Q  102 gggacatccgataaaattggaacgatacag 131  Q
    ||||||||||||||||||||||||||||||    
T  50852462 gggacatccgataaaattggaacgatacag 50852433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 31142046 - 31141947
Alignment:
Q  91 ttgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaa 190  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31142046 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 31141947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 30272473 - 30272551
Alignment:
Q  104 gacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatg 183  Q
    |||||||||||||||||||| |||||||||||||||||||||| || |||||||  ||||||||||||||| ||||||||    
T  30272473 gacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaacaatgacacgcacaaatcgagaaatg 30272551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 27402499 - 27402434
Alignment:
Q  125 gatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaa 190  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  27402499 gatacagaaaaaattagcatggcccctgcacaaggatgacacgcacaaatcgagaaatggtccaaa 27402434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 27981698 - 27981768
Alignment:
Q  104 gacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaat 174  Q
    ||||||||||||||||| ||| ||| ||||||||| ||||||  ||||  |||||||||||| ||||||||    
T  27981698 gacatccgataaaattgaaacaatatagagaagatcagcatgagccctatgcaaggatgacatgcacaaat 27981768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 34470026 - 34470066
Alignment:
Q  93 gtccctttggggacatccgataaaattggaacgatacagag 133  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  34470026 gtcccttcggggacatccgataaaattggaatgatacagag 34470066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 43428941 - 43428975
Alignment:
Q  151 tgcgcaaggatgacacgcacaaattgagaaatggt 185  Q
    |||||||||||||||| ||||||||||||||||||    
T  43428941 tgcgcaaggatgacacacacaaattgagaaatggt 43428975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 6760094 - 6760131
Alignment:
Q  93 gtccctttggggacatccgataaaattggaacgataca 130  Q
    |||||||  |||||||||||||||||||||||||||||    
T  6760094 gtcccttcagggacatccgataaaattggaacgataca 6760131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 4984 - 4895
Alignment:
Q  94 tccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatg 183  Q
    |||||| |||||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  4984 tcccttcggggacattcgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 4895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 32271421 - 32271342
Alignment:
Q  112 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaaa 191  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  32271421 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcaaaaa 32271342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 43741443 - 43741541
Alignment:
Q  92 tgtccctttggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggtccaaa 190  Q
    ||||||||  ||||||||||||||||||  ||| ||||| ||||||||| |||||| ||||| |||||||||||||||| ||| |||||||||||||||    
T  43741443 tgtcccttcagggacatccgataaaattaaaacaatacatagaagattaacatggctcctgcacaaggatgacacgcaccaatcgagaaatggtccaaa 43741541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 33815475 - 33815396
Alignment:
Q  113 taaaattggaacgatacagagaagattagcatggcc-cctgcgcaaggatgacacgcacaaattgagaaatggtccaaaa 191  Q
    |||||||||||||||||  ||||||||||||||||| |||   | ||||||||||||||| ||| ||| | |||||||||    
T  33815475 taaaattggaacgatacgaagaagattagcatggcctcctcatcgaggatgacacgcacatattaagatacggtccaaaa 33815396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 8762982 - 8763031
Alignment:
Q  136 gattagcatggcccctgcgcaaggatgacacgcacaaattgagaaatggt 185  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8762982 gattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggt 8763031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 7777985 - 7777910
Alignment:
Q  111 gataaaattggaacgatacagagaagattagcatggc-ccctgcgcaaggatgacacgcacaaattgagaaatggt 185  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| || ||| |||| ||||||||||    
T  7777985 gataaaattggaacgatacagagaagattagcatggcacccggcgtaaggatggcaagcataaatcgagaaatggt 7777910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 7772377 - 7772341
Alignment:
Q  111 gataaaattggaacgatacagagaagattagcatggc 147  Q
    |||||||||||||||||||||||||||||||||||||    
T  7772377 gataaaattggaacgatacagagaagattagcatggc 7772341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 7792777 - 7792702
Alignment:
Q  111 gataaaattggaacgatacagagaagattagcatggc-ccctgcgcaaggatgacacgcacaaattgagaaatggt 185  Q
    |||||||||||||||||| |||||||||||||||||| |||  || ||||||| || ||| |||| ||||||||||    
T  7792777 gataaaattggaacgatatagagaagattagcatggcacccgacgtaaggatggcaagcataaatcgagaaatggt 7792702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 8058720 - 8058757
Alignment:
Q  93 gtccctttggggacatccgataaaattggaacgataca 130  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  8058720 gtcccttcggggacatccgataaaattggagcgataca 8058757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University