View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19097_high_75 (Length: 251)

Name: NF19097_high_75
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19097_high_75
NF19097_high_75
[»] chr4 (2 HSPs)
chr4 (18-246)||(9498854-9499082)
chr4 (166-213)||(56201173-56201220)
[»] chr7 (5 HSPs)
chr7 (98-239)||(18846185-18846325)
chr7 (98-239)||(15660280-15660420)
chr7 (50-207)||(47790300-47790458)
chr7 (162-242)||(36692251-36692331)
chr7 (50-148)||(15660179-15660278)
[»] chr1 (6 HSPs)
chr1 (98-238)||(34624211-34624350)
chr1 (102-246)||(29403624-29403769)
chr1 (102-238)||(20039505-20039641)
chr1 (78-148)||(29403830-29403900)
chr1 (80-148)||(20039431-20039499)
chr1 (205-236)||(11375456-11375487)
[»] chr8 (4 HSPs)
chr8 (98-239)||(20293201-20293343)
chr8 (98-239)||(21079832-21079974)
chr8 (102-239)||(13955753-13955888)
chr8 (108-229)||(2108287-2108409)
[»] chr6 (4 HSPs)
chr6 (107-228)||(29355339-29355460)
chr6 (100-239)||(19058850-19058986)
chr6 (178-243)||(7492158-7492223)
chr6 (78-148)||(19058990-19059060)
[»] chr2 (2 HSPs)
chr2 (126-238)||(23218993-23219105)
chr2 (179-242)||(44672756-44672821)
[»] chr3 (1 HSPs)
chr3 (102-174)||(28914400-28914472)
[»] scaffold0692 (1 HSPs)
scaffold0692 (166-213)||(5006-5053)
[»] chr5 (1 HSPs)
chr5 (205-233)||(43575459-43575487)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 9498854 - 9499082
Alignment:
18 atacatgtgttttcccaaacaagcacagcttatagaagctgtgggaatacaaaagatagtatatttactggaatctaggaagaatttcagttatataaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9498854 atacatgtgttttcccaaacaagcacagcttatagaagctgtgggaatacaaaagatagtatatttactggaatctaggaagaatttcagttatataaga 9498953  T
118 gtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctc 217  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9498954 gagggaagcctagagggtgagacattaagaaagtttgttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctc 9499053  T
218 tgaactctggtttatcctttcatttcagt 246  Q
    |||||||||||||||||||||||||||||    
9499054 tgaactctggtttatcctttcatttcagt 9499082  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 56201173 - 56201220
Alignment:
166 ttaggagagaagttctctctggtctaggagcttagctctggtaggagt 213  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
56201173 ttaggagagatgttctctctggtctaggagcctagctctggtaggagt 56201220  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 18846325 - 18846185
Alignment:
98 agaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 197  Q
    ||||||||||||||| ||||| ||| || ||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
18846325 agaatttcagttataaaagaggggggagtctagagg-taaggcattcagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 18846227  T
198 tagctctggtaggagttctctgaactctggtttatcctttca 239  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
18846226 tagctctggtaggagttctcagaactctggtttatcttttca 18846185  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 15660280 - 15660420
Alignment:
98 agaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 197  Q
    |||||||| |||||| ||||| ||| || ||||||  | || |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
15660280 agaatttccgttataaaagaggggggagtctagaga-taaggcattcagaaagtttgttaagagttgtttaggagagaagttctttctggtctaggagct 15660378  T
198 tagctctggtaggagttctctgaactctggtttatcctttca 239  Q
    |||||||||||||||||||||||||||||||||||| |||||    
15660379 tagctctggtaggagttctctgaactctggtttatcttttca 15660420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 47790458 - 47790300
Alignment:
50 tagaagctgtgggaatacaaa-agatagtatatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 148  Q
    ||||||||||||||| ||||| |  ||| ||| ||| ||||||| ||||||||||||||||||  || || ||||| ||||||||||||  || | ||||    
47790458 tagaagctgtgggaacacaaacatttagaataattattggaatcaaggaagaatttcagttattaaacagagggaatcctagagggtgaagcagtcagaa 47790359  T
149 agttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggt 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
47790358 agtttcttaagagttgtttaggagagaagttctctctggtctaggagcttaactctggt 47790300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 36692251 - 36692331
Alignment:
162 ttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcattt 242  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||   ||||||||||    
36692251 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttacccctttcattt 36692331  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 15660179 - 15660278
Alignment:
50 tagaagctgtgggaatacaaa-agatagtatatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 148  Q
    ||||||||||||||||||||| || ||  ||| ||| |||||| |||| |||||| |||||||  ||||| |||||||||||||||| || |||||||||    
15660179 tagaagctgtgggaatacaaacagttataataattattggaatttaggcagaattgcagttattgaagagagggaagcctagagggtcagtcattaagaa 15660278  T

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Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 34624350 - 34624211
Alignment:
98 agaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 197  Q
    ||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||    
34624350 agaattttagttataaaagagagggaagcctagagggtgaggcattaagaaagtttgt-aagagttgtttaggagaaaagttgtctctggtctaggagct 34624252  T
198 tagctctggtaggagttctctgaactctggtttatcctttc 238  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
34624251 tagctctggtaggagttctctgaactatggttaatcatttc 34624211  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 102 - 246
Target Start/End: Complemental strand, 29403769 - 29403624
Alignment:
102 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagc 201  Q
    ||||||||||| ||||  |||||| |||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||    
29403769 tttcagttataaaagatagggaagtctagagggtgattcattcagaaagtttattaagagttgtttaggagagaagttctctctggtcttggagcttggc 29403670  T
202 tctggtaggagttctctgaactctggtttatccttt-catttcagt 246  Q
    || ||||| |||||||||||| |||||||||| ||| |||||||||    
29403669 tcgggtagaagttctctgaaccctggtttatcatttccatttcagt 29403624  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 20039505 - 20039641
Alignment:
102 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagc 201  Q
    ||||||||||| ||||| | ||||||||||||||||  |||  ||||| |||  |||||||||| ||||||||||||||| |||||||||||||||||||    
20039505 tttcagttataaaagagagagaagcctagagggtgatgcatacagaaaatttagtaagagttgtctaggagagaagttctttctggtctaggagcttagc 20039604  T
202 tctggtaggagttctctgaactctggtttatcctttc 238  Q
    ||||||||||||||||| |||||||||||||| ||||    
20039605 tctggtaggagttctctaaactctggtttatcatttc 20039641  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 29403900 - 29403830
Alignment:
78 atatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 148  Q
    ||||||| ||||||||||||||| ||||||||||  ||||| ||||||||| |||||| || |||||||||    
29403900 atatttattggaatctaggaagagtttcagttattaaagagagggaagccttgagggttagtcattaagaa 29403830  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 20039431 - 20039499
Alignment:
80 atttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 148  Q
    ||||| ||||||||||||||| ||||||||||  |||||  ||||||||||||||| || |||||||||    
20039431 atttattggaatctaggaagagtttcagttattcaagagaaggaagcctagagggttagtcattaagaa 20039499  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Complemental strand, 11375487 - 11375456
Alignment:
205 ggtaggagttctctgaactctggtttatcctt 236  Q
    ||||||||||||||||||||||||||||||||    
11375487 ggtaggagttctctgaactctggtttatcctt 11375456  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 20293343 - 20293201
Alignment:
98 agaatttcagttatataagagtgggaagcc-tagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagc 196  Q
    ||||||||||||||| | ||| || ||||| ||||||| ||| |||| |||||||||  |||||||||||||||||||||||||||||| || |||||||    
20293343 agaatttcagttatagaggagaggaaagccctagagggggaggcattcagaaagtttgctaagagttgtttaggagagaagttctctcttgtataggagc 20293244  T
197 ttagctctggtaggagttctctgaactctggtttatcctttca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||    
20293243 ttagctctggtaggagttctctgaactctggtttatcctttca 20293201  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 21079974 - 21079832
Alignment:
98 agaatttcagttatataagagtgggaagcc-tagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagc 196  Q
    ||||||||||||||| | ||| || ||||| ||||||| ||| |||| |||||||||  |||||||||||||||||||||||||||||| || |||||||    
21079974 agaatttcagttatagaggagaggaaagccctagagggggaggcattcagaaagtttgctaagagttgtttaggagagaagttctctcttgtataggagc 21079875  T
197 ttagctctggtaggagttctctgaactctggtttatcctttca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||    
21079874 ttagctctggtaggagttctctgaactctggtttatcctttca 21079832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 102 - 239
Target Start/End: Complemental strand, 13955888 - 13955753
Alignment:
102 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagc 201  Q
    ||||||||||| ||||| ||| || ||||||| | || |||| ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
13955888 tttcagttataaaagaggggggagtctagagg-taaggcattcagaaagttgct-aagagttgtttaggagagaagttctctctggtctaggagcttagc 13955791  T
202 tctggtaggagttctctgaactctggtttatcctttca 239  Q
    |||||||||||||||||||||||||||| |||||||||    
13955790 tctggtaggagttctctgaactctggttaatcctttca 13955753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 2108409 - 2108287
Alignment:
108 ttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctgg- 206  Q
    ||||| ||||| ||||||||||| | ||||| ||||  |||||| |||||||||||  ||||||||||| || |||||||||||||||| |||||||||     
2108409 ttatagaagagagggaagcctagtgagtgagtcattgggaaagtattttaagagtttgttaggagagaaattttctctggtctaggagcctagctctggt 2108310  T
207 taggagttctctgaactctggtt 229  Q
    |||||||||   |||||||||||    
2108309 taggagttcatagaactctggtt 2108287  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 29355460 - 29355339
Alignment:
107 gttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctgg 206  Q
    |||||| ||||| || |||||||||| || || |||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
29355460 gttataaaagagaggaaagcctagagagtaaggcattcataaagtttgttaagagttgtttaggagagaagttctatctggtctaggagcttagctctgg 29355361  T
207 taggagttctctgaactctggt 228  Q
    |||||||||||||| |||||||    
29355360 taggagttctctgagctctggt 29355339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 19058986 - 19058850
Alignment:
100 aatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagctta 199  Q
    ||||||||||| | |||||  |||||||||||||||||  | ||||| |||||| ||||||||||||||||||| ||||   ||||||||||||||| ||    
19058986 aatttcagttaaaaaagagacggaagcctagagggtgaatcgttaaggaagtttgttaagagttgtttaggagataagt---ctctggtctaggagccta 19058890  T
200 gctctggtaggagttctctgaactctggtttatcctttca 239  Q
    |||||||||||||||||||   ||||||||||||||||||    
19058889 gctctggtaggagttctcttccctctggtttatcctttca 19058850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 7492158 - 7492223
Alignment:
178 ttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttc 243  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| ||| ||||||| |||| ||||    
7492158 ttctctctggtctacgagcttagctctggtaggtattctctgaattctagtttatcttttcgtttc 7492223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 19059060 - 19058990
Alignment:
78 atatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 148  Q
    ||||| ||||||||||||||||||||||||||||  |||||  |||| |||||||||  || |||||||||    
19059060 atattcactggaatctaggaagaatttcagttattaaagagaaggaatcctagagggctagtcattaagaa 19058990  T

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Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 23219105 - 23218993
Alignment:
126 cctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactct 225  Q
    |||||||  |||| |||| ||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
23219105 cctagagaatgaggcattcagaaagtttgtcatgagttgtttaggagagaagttctctctgatctaggagcttagctctggtaggagttctctgaactct 23219006  T
226 ggtttatcctttc 238  Q
    |||||||| ||||    
23219005 ggtttatcatttc 23218993  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 44672821 - 44672756
Alignment:
179 tctctctggtctaggagcttagctctgg-taggagttctctgaactctggtttatc-ctttcattt 242  Q
    |||||||||||||||||| ||||||||| |||||||||   ||||||||||||||| |||||||||    
44672821 tctctctggtctaggagcatagctctggttaggagttcatagaactctggtttatctctttcattt 44672756  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 28914472 - 28914400
Alignment:
102 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagag 174  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||| ||| |||||| ||||||| |||||    
28914472 tttcagttatataagagagggaagcctagagggtgattcattcagaaactttattaagaattgtttaagagag 28914400  T

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Target: scaffold0692 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 5053 - 5006
Alignment:
166 ttaggagagaagttctctctggtctaggagcttagctctggtaggagt 213  Q
    |||| ||||| ||||||||| |||||||||| ||||||||||||||||    
5053 ttagcagagatgttctctctagtctaggagcctagctctggtaggagt 5006  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 43575459 - 43575487
Alignment:
205 ggtaggagttctctgaactctggtttatc 233  Q
    |||||||||||||||||||||||||||||    
43575459 ggtaggagttctctgaactctggtttatc 43575487  T

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