View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_high_76 (Length: 251)
Name: NF19097_high_76
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_high_76 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 51274829 - 51274579
Alignment:
| Q |
1 |
ttattttatgctatggtatggatggaattggagttggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaac |
100 |
Q |
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| T |
51274829 |
ttattttatgctatggtatggatggaattggagttggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaac |
51274730 |
T |
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| Q |
101 |
accctcaatctcgttagtcttcaagtttccaacaaaaattctatgagcacgttgtaagaacacaacatcaccatcataaggatgaaaagctctcacttga |
200 |
Q |
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| T |
51274729 |
accctcaatctcgttagtcttcaagtttccaacaaaaattctatgagcacgttgtaagaacacaacatcaccatcataaggatgaatagctctcacttga |
51274630 |
T |
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| Q |
201 |
gtccccatatcaacaatttcattccttcccccagtcatcaataactcatct |
251 |
Q |
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| T |
51274629 |
gtccccatatcaacaatttcattccttcccccagtcatcaacaactcatct |
51274579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 14908244 - 14908100
Alignment:
| Q |
39 |
cacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccctcaatctcgttagtcttcaagtttccaaca-aaa |
137 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||| ||||||| ||||||||||||| |||||||| ||| |
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| T |
14908244 |
cacaatggaagatcaactgaaatcatttgcaacgattcaaacccatgaatcccattcctaacaccttcaatcttgttagtcttcaagattccaacaaaaa |
14908145 |
T |
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| Q |
138 |
attctatgagcacgttgtaagaacacaacatcaccatcataaggat |
183 |
Q |
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| T |
14908144 |
attctataagcac-ttgtaagaacacaacatcaccatcataaggat |
14908100 |
T |
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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 19242689 - 19242883
Alignment:
| Q |
36 |
ggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccctcaatctcgttagtcttcaagtttccaacaa |
135 |
Q |
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|||||| |||||||| |||||||||| ||||||||| ||| |||| | |||||| ||||||| ||||| | || | |||| |||||| |||||||| | |
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| T |
19242689 |
ggccaccatggaagaacaagtgaaattatttgcaacaatttaaactcctgaatcgcataaccgacaccattaaacatgttaaccttcaaatttccaacga |
19242788 |
T |
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| Q |
136 |
aaattctatgagcacgttgtaagaacacaacatcaccatcataaggatgaaaagctctcacttgagtccccatatcaacaatttcattccttccc |
230 |
Q |
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| T |
19242789 |
aaatcctatgagcatgttgcgagaacccaacatcactatcataaggatggaaagctctaacttgagtccccataccaacaatttcaccccttccc |
19242883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 38783662 - 38783467
Alignment:
| Q |
19 |
tggatggaattggagttggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccctcaatctcgttagt |
118 |
Q |
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||||||| |||| || |||||| || | ||| |||||||||||||| ||| ||||||||| |||||||||| ||||||| || ||||||| |||| | |
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| T |
38783662 |
tggatgggattgtaggtggccaaaaggaaaggtcaagtgaaatcatcgacaatgattgaaacacatgaatcccgtaaccaatcccatcaatcttgttact |
38783563 |
T |
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| Q |
119 |
cttcaagtttccaacaaaaattctatgagcacgttgtaagaacacaacatcaccatcataaggatgaaaagctctcacttgagtccccatatcaacaat |
217 |
Q |
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| T |
38783562 |
cttcaagttgctaacaaaagttctatgaggacgctgtaagaac---acatcaccatgataagaatgaaaagttctcacttgagtcctcatatcaacaat |
38783467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 238
Target Start/End: Complemental strand, 35923084 - 35922885
Alignment:
| Q |
43 |
atggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccctcaatctcgttagtcttcaagtttccaacaaaaattct |
142 |
Q |
| |
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|||||||| |||||||||| ||||||||| ||| |||||| |||||| ||||||||||||| | || | |||| |||||| |||||||||||||| || |
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| T |
35923084 |
atggaagaacaagtgaaattatttgcaacaatttaaacccctgaatcgcataaccaacaccattaaacatgttaaccttcaaatttccaacaaaaatcct |
35922985 |
T |
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| Q |
143 |
atgagcacgttgtaagaacacaacatcaccatcataaggat-gaaaagctctcacttgagt---ccccatatcaacaatttcattccttcccccagtcat |
238 |
Q |
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| T |
35922984 |
atgagcacgttgtgagtgcccaacatcaccatcataaggatggaaaggctctaacctgagtcccccccatatcaacaatttcaccccttccccctgtcat |
35922885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 5050796 - 5050949
Alignment:
| Q |
6 |
ttatgctatggtatggatggaattggagttggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccct |
105 |
Q |
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|||||||||| |||||||||| ||||| | ||||||||||||| ||||| ||||||||| |||| ||||||| |||||||||| || |||||||| | |
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| T |
5050796 |
ttatgctatgttatggatgga-ttggaataggccacaatggaatatcaa--aaaatcatttacaacaattgaaa-ccatgaatccaatgaccaacacaat |
5050891 |
T |
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| Q |
106 |
caatctcgttagtcttcaagtttccaacaaaaattctatgagcacgttgtaagaacacaacatcacc |
172 |
Q |
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||| |||||||| ||||||||| |||| |||||||||||| | ||||||||||||||| |
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| T |
5050892 |
caa---------tcttcaagcctccaacaaatattccatgagcacgttgcacgaacacaacatcacc |
5050949 |
T |
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