View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_10 (Length: 513)
Name: NF19097_low_10
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 2643302 - 2643433
Alignment:
| Q |
12 |
acagactcaaataatagcatcacacaacaagtaatttacaatagggaatttatacaattccagcaatactataatatattacacacnnnnnnnattttac |
111 |
Q |
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| T |
2643302 |
acagactcaaataatagcatcacacaacaagtaatttacaatagggaatttatacaattccagcaatactataatatattacacactttttttattttac |
2643401 |
T |
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| Q |
112 |
aatatagatagattgcatctctttttgttgat |
143 |
Q |
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| T |
2643402 |
aatatagatagattgcatctctttttgttgat |
2643433 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 367 - 469
Target Start/End: Original strand, 2643675 - 2643788
Alignment:
| Q |
367 |
tcgatgcggtcgagctcttgttggcctctaaattaatgtaaaaaagttataaattgataata-----------tatcagaaatcataaagttatgtgatg |
455 |
Q |
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| T |
2643675 |
tcgatgcggtcgagctcttgttggcctctaaattaatgtaaaaaagttataaattgataataataataataataatcagaaatcataaagttaggtgatg |
2643774 |
T |
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| Q |
456 |
agatcataaaataa |
469 |
Q |
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| T |
2643775 |
agatcataaaataa |
2643788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 328
Target Start/End: Original strand, 2643548 - 2643636
Alignment:
| Q |
242 |
gttgatgatagattccatttcttattccccctgcaattgttgtatgcttatttataaaggaggaaaatttcc--agagactccttcaca |
328 |
Q |
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| T |
2643548 |
gttgatgatagattccatttcttatttcccctgcaattgttgcatgcttatttataaaggaggaaactgtccagagagactccttcaca |
2643636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 2643441 - 2643495
Alignment:
| Q |
133 |
tttttgttgataatggattgcatttcttactcctcagcaatataccaatagatggaa |
189 |
Q |
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| T |
2643441 |
tttttgttgataatagattgcatttcttactcctcagca--ataccaatagatggaa |
2643495 |
T |
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