View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_12 (Length: 500)
Name: NF19097_low_12
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 237 - 491
Target Start/End: Original strand, 50373339 - 50373585
Alignment:
| Q |
237 |
ggagttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccact |
336 |
Q |
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| T |
50373339 |
ggagttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccact |
50373438 |
T |
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| Q |
337 |
actatatcccaaagctgcttaagcatgtgcatgtgcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaac |
436 |
Q |
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| T |
50373439 |
actatatcccaaagctgcttaa------------gcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaac |
50373526 |
T |
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| Q |
437 |
aaacctattcccaacaccactcact----gtcactggtttacggctacacaggttctgc |
491 |
Q |
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| T |
50373527 |
aaacctattcccaacaccactcactgtcagtcactggtttacggctacacagggtctgc |
50373585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 50373130 - 50373323
Alignment:
| Q |
20 |
aatccaatttgcagaatgatgagagaaaacagcttaactgcacactaattctactttttacggtcatctatacattttagaaagttagtggaagctaaac |
119 |
Q |
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| T |
50373130 |
aatccaatttgcagaatgatgagagaaaacagcttaactgcacactaattctactttttacggtcatctatacattttagaaagttagtggaagctaaac |
50373229 |
T |
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| Q |
120 |
acttcaatccaacctaatactatgtgtgcttgctaactagcgcctaatagatagtttaatagaaaatccagtcgtacacattcatcgttaacca |
213 |
Q |
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| T |
50373230 |
acttcaatccaacctaatactatgtgtgcttgccaactagcgcctaatagatagtttaatagaaaatccagtcgtacacattcatcgttaacca |
50373323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 48272567 - 48272529
Alignment:
| Q |
82 |
gtcatctatacattttagaaagttagtggaagctaaaca |
120 |
Q |
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| T |
48272567 |
gtcatctatacattttagaaagttagtgcaagctaaaca |
48272529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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