View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_13 (Length: 499)
Name: NF19097_low_13
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 7237743 - 7238083
Alignment:
| Q |
11 |
cacagatcaagtgggcaacacttaaattgaccaaaaagaaaagtattcacttaaaatcattatataaatcaaggattaattacacataaatagaatacaa |
110 |
Q |
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| T |
7237743 |
cacagatcaagtgggcaacacttaaattgaccaaaaagaaaagtattcacttaaaatcattatataaatcaaggattaattacacataaatagaatacaa |
7237842 |
T |
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| Q |
111 |
gttgacaacaagcttcaccgcttggtcttttgggtggcaaaaccattaagtaaggttttgcagtcaagactagactttgtatggagactataacctgtag |
210 |
Q |
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| T |
7237843 |
gttgacaacaagcttcgccgcttggtcttttgggtggcaaaaccattaagtaaggttttgcagtcaagactagaccttgtatggagactataacctgtag |
7237942 |
T |
|
| Q |
211 |
aaatattgttgaaacacgtcgaacccaacactcatttttgtttccgctccaagtgttaagtagattaaggcataaaaagccacacattttcaaatttgga |
310 |
Q |
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| T |
7237943 |
aaatattgttgaaacacgtcgaacccaacactcatttttgtttccgctccaagtgttaagtagattaaggcataaaaagccacacattttcaaatttgga |
7238042 |
T |
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| Q |
311 |
ttcaacttagaagagccacaatgattgtggaagtagacttg |
351 |
Q |
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| T |
7238043 |
ttcaacttagaagagctgcaacgattgtggaagtagacttg |
7238083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 345 - 482
Target Start/End: Original strand, 7238102 - 7238239
Alignment:
| Q |
345 |
agacttgaaataaaaagtcgcaagaacatgatgttagtcagatagggtatcgtgagtcacataccggtggtacattgggaaagcggaagccaccaagaaa |
444 |
Q |
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| T |
7238102 |
agacttgaaataaaaagtcgcaagaacatgatgttagtcagatagggtatcgtgagccacataccggcggtacattgggaaagcggaagccaccaagaaa |
7238201 |
T |
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| Q |
445 |
gtaaagatcgaaaagaaaagaccgtcatggtaagaagt |
482 |
Q |
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| T |
7238202 |
gtaaagatcgaaaagaaaagaccgtcatggtaagaagt |
7238239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 41432227 - 41432175
Alignment:
| Q |
158 |
aagtaaggttttgcagtcaagactagactttgtatggagactataacctgtag |
210 |
Q |
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| T |
41432227 |
aagtaaggctttgcattcaagattagaccttgtatggagactagaacttgtag |
41432175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 5838958 - 5839075
Alignment:
| Q |
171 |
cagtcaagactagactttgtatggagactataacctgtagaaatattgttgaaacacgtcgaacccaacactcatttttgtttccgctccaagtgttaag |
270 |
Q |
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| T |
5838958 |
cagtcaagactagaccttgaatggagactagaacctgtaga---attgttgaaacatgtggacgccaacgctcattctttttgccatcccaagtgttaag |
5839054 |
T |
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| Q |
271 |
tagattaaggcataaaaagcc |
291 |
Q |
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|||| ||||||||||| |||| |
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| T |
5839055 |
tagactaaggcataaagagcc |
5839075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 478
Target Start/End: Original strand, 5839222 - 5839310
Alignment:
| Q |
385 |
gatagggtatcgtgagtcacataccggtggtacattgggaaagcggaagccaccaagaaagtaaagatcgaaaa-gaaaagaccgtcatggtaag |
478 |
Q |
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||||| |||||| || |||||||||| |||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||| |
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| T |
5839222 |
gatagagtatcgccagccacataccggcggtacattgggaaagc------caccaggtaagtaaagatcgaaaaagaaaagaccgtcatggtaag |
5839310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 33370517 - 33370465
Alignment:
| Q |
158 |
aagtaaggttttgcagtcaagactagactttgtatggagactataacctgtag |
210 |
Q |
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|||||||| |||||| |||||| |||| ||||||||||||||| ||||||||| |
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| T |
33370517 |
aagtaaggctttgcattcaagattagaatttgtatggagactagaacctgtag |
33370465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 18670979 - 18671007
Alignment:
| Q |
78 |
atcaaggattaattacacataaatagaat |
106 |
Q |
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| T |
18670979 |
atcaaggattaattacacataaatagaat |
18671007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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