View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_15 (Length: 458)
Name: NF19097_low_15
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 394
Target Start/End: Complemental strand, 41939389 - 41939001
Alignment:
| Q |
6 |
aggagcagagatccaatattgaggaataatgggagtgtgagatggttttgaagtgaaagttggattaattagggcattaagtgctacatttacagcacaa |
105 |
Q |
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| T |
41939389 |
aggagaagggatccaatattgaggaataatgggagtgtgagatggttttgaagtgaaagttggattaattagggcattaagtgctacatttacagcacaa |
41939290 |
T |
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| Q |
106 |
gtatggtgatggtggagagaggtagtagtagaaataggtatttgatgtaagggagggatagtagtactaatagtgggatgagggggtgtgagtttgggag |
205 |
Q |
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| T |
41939289 |
gtatggtgatggtggagagaggtagtagtagaaataggtatttgatgcaagggagggatagtagtactaatagtgggatgagggggtgtgagtttgggag |
41939190 |
T |
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| Q |
206 |
gtatttggtggccaggaggagcaagagagaggaagatggaatcttcatcatctaagctgctgctgcaagaggcactctcacaagagaatgagtagtaccg |
305 |
Q |
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| T |
41939189 |
gtatttggtggccaggaggagcaagagagaggaagatggaatcttcatcatctaagctgctgctgcaagaggcactctcacaagagaatgagtagtactg |
41939090 |
T |
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| Q |
306 |
atgatgagtttgcatggttattatgcagcatttggtttgatgggatgggatatatgaatagggcacgtataaaggaaggactatggaga |
394 |
Q |
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| T |
41939089 |
atgatgagtttgcatggttattatgcagcatttggtttgatgggatgggatatatgaatagggcacgtataaaggaaggactatggaga |
41939001 |
T |
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