View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_17 (Length: 447)
Name: NF19097_low_17
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 48092056 - 48092358
Alignment:
| Q |
13 |
agcagagagtgagtggtcttattggacctgaacaaactcagagcttagtgaatggagcattagtactcatcactcttggaggaaatgattttgtgaataa |
112 |
Q |
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| T |
48092056 |
agcagagagtgagtggtcttattggacctgaacaaactcagagcttagtgaatggagcattagtactcatcactcttggaggaaatgattttgtgaataa |
48092155 |
T |
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| Q |
113 |
ctattacttagtgccattctctgcaagatcacgccaatacaatttaccggattatgtcagatatataatatctgaatataagaagattttgagggtaaat |
212 |
Q |
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| T |
48092156 |
ctattacttagtgccattctctgcaagatcacgccaatacaatttaccggattatgtcagatatataatatctgaatataagaagattttgagggtaaat |
48092255 |
T |
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| Q |
213 |
tactctctttttcattgcatgtgatccatt----------atttgatttgatttatttcacggtcaaattatataaataattggttagtagtatcaatca |
302 |
Q |
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| T |
48092256 |
tactctctttttcatagcatgtgatccattatttgatttgatttgatttgatttatttcacggtcaaattatataaataattggttagtagtatcaatca |
48092355 |
T |
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| Q |
303 |
tgg |
305 |
Q |
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||| |
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| T |
48092356 |
tgg |
48092358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 48092352 - 48092440
Alignment:
| Q |
340 |
atcatggatatatggcgtagaagtcagataaattttgtatcaaacataagattggataaaaagtgacatgatgtaatgtggagtgtgca |
428 |
Q |
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| T |
48092352 |
atcatggatatatggcgtagaagtcagataaattttgtatcaaacataagattggataaaaagtgacatgatgtaatgtggagtgtgca |
48092440 |
T |
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