View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19097_low_2 (Length: 746)
Name: NF19097_low_2
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 379 - 736
Target Start/End: Complemental strand, 27561830 - 27561473
Alignment:
| Q |
379 |
gtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaa |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27561830 |
gtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtacgtttggatctcctcatttcttacaatattaaa |
27561731 |
T |
|
| Q |
479 |
cgtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaa |
578 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27561730 |
cgttttagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatcgaaa |
27561631 |
T |
|
| Q |
579 |
gatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgaatgggaaggttattcacacaaactgccctttcattttcttt |
678 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27561630 |
gatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgagtgggaaggttattcacacaaacttccctttcattttcttt |
27561531 |
T |
|
| Q |
679 |
ctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
736 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27561530 |
ctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
27561473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 220 - 732
Target Start/End: Complemental strand, 36668870 - 36668348
Alignment:
| Q |
220 |
tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc |
319 |
Q |
| |
|
|||||||| |||||| |||| ||||| |||||||||||||| |||| ||||| |||| ||| |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
36668870 |
tttaggctagcaggactaacattgcaaaacgggagaaggaattgaattctaaattggagtctgcggttaatgcaaggcatatccatgacatttctgactc |
36668771 |
T |
|
| Q |
320 |
tatgactgatgagctcaagattcagttgcaaaagtgtattaa--------atgatgttgaaatcaaggtggaagaggccaaagaggatactggtctgtat |
411 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| |||||||| | |
|
|
| T |
36668770 |
taggactgatgagctcaagattcagttgcaaaagtgtattaatgaaaggaatgatcttgaaatcaagatggaagaggccaaacaagatattggtctgtgt |
36668671 |
T |
|
| Q |
412 |
atcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtt |
511 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
36668670 |
atcatattttcattatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaatgtttcagggagaaaagatatcaaagctgagtt |
36668571 |
T |
|
| Q |
512 |
tcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgag |
611 |
Q |
| |
|
| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| | |
|
|
| T |
36668570 |
tggtgtgatgtcttcagccttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcatgaagctgtatcattgcgtgcg |
36668471 |
T |
|
| Q |
612 |
aaagcacattcatt--cagcgaaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtcttgtacaga |
709 |
Q |
| |
|
||||||||||| | || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
36668470 |
aaagcacattcgctaagagagaaattgagtgggaaggttattcacacaaactgccatttcattttctttctcaccttctttgtgataggtcttttacaga |
36668371 |
T |
|
| Q |
710 |
aatttatctaaataatttgagtc |
732 |
Q |
| |
|
|| ||||||| |||||||||||| |
|
|
| T |
36668370 |
aagttatctagataatttgagtc |
36668348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 27562144 - 27561954
Alignment:
| Q |
1 |
gtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgtttatttccagaatgaactaaatgatgata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27562144 |
gtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgtttatttccagaatgaactaaatgatgata |
27562045 |
T |
|
| Q |
101 |
atatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatcgctgaattggatagatataaatcattaacagtg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27562044 |
atatgtacacacttcccgagtatactctatggaaaatgatcaacttcaacattggatcgctgaattggatagatataaatcattaacagtg |
27561954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 36669198 - 36669011
Alignment:
| Q |
1 |
gtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgtttatttccagaatgaactaaatgatgata |
100 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36669198 |
gtcattatttcttcagtaattgagatgcattgactc-agggttccatctaaaagtatcttttcatgtatgtttatt-ccagaatgaactaaatgatgata |
36669101 |
T |
|
| Q |
101 |
a-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatcgctgaattggatagatataaatcattaacag |
189 |
Q |
| |
|
| ||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||||||||||| ||||||||| |||| |
|
|
| T |
36669100 |
agtatgtacgcacttcccgagtatactctttggcaaaggatcaacttcaacattggattgctgaattggatagatttaaatcattgacag |
36669011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 411 - 493
Target Start/End: Complemental strand, 31707919 - 31707837
Alignment:
| Q |
411 |
tatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaa |
493 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
31707919 |
tatcacattttctctatttagatttgtagtgtgtatgtttggatctcctcatttcttacaatattaaatgtttcaaggagaaa |
31707837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 361 - 617
Target Start/End: Original strand, 36672630 - 36672887
Alignment:
| Q |
361 |
aatgatgttgaaatcaaggtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctc |
460 |
Q |
| |
|
|||||| | ||||| ||| ||||| |||||||| | |||| ||||||| ||||||| |||| ||||||||||| || ||||| |||||||| ||||||| |
|
|
| T |
36672630 |
aatgatatggaaattaagatggaaaaggccaaacaagatattggtctgcatatcacattttatctatttagatatgaagtgtctatgtttgaatctccta |
36672729 |
T |
|
| Q |
461 |
atttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgat-atcttcagctttatct-aaagaaatggggatgatggaaa |
558 |
Q |
| |
|
||||||||| |||| | |||| | |||||| | |||||||| |||||| |||||||| ||| | |||||||||| ||| |||| ||||||| ||| |
|
|
| T |
36672730 |
gtttcttacagtattgcatgtttaaaggagaataggtatcaaagttgagttacgtgtgatgatcat-agctttatctaaaaaaaattgggatgacagaag |
36672828 |
T |
|
| Q |
559 |
cacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagca |
617 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||| |||| ||||| ||||||||||| |
|
|
| T |
36672829 |
atcagttgaagtgatggaaagatgtagctcttgaagttgtatcattgtgtgagaaagca |
36672887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 387 - 599
Target Start/End: Original strand, 27563307 - 27563519
Alignment:
| Q |
387 |
ggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcag |
486 |
Q |
| |
|
||||||| | ||| || ||||| ||||||| |||| | ||||||||| | |||||||||||||| |||| || |||||||| ||||| | ||||||| |
|
|
| T |
27563307 |
ggccaaacaagatgctagtctgcatatcacattttttgtatttagatgtctagtgtgtatgtttgaatcttctagtttcttaccatattgcatgtttcag |
27563406 |
T |
|
| Q |
487 |
ggagaaatgatatcaaagctgagtttcgtgtgat-atcttcagctttatctaaagaaat-ggggatgatggaaacacagttgaagcgatggaaagatgca |
584 |
Q |
| |
|
||||| | |||||| || |||||| ||||||| ||||| ||||||||||||| |||| ||||||||||||| ||||||||| ||| ||| |||||| |
|
|
| T |
27563407 |
ggagagaagatatc-aacttgagttatgtgtgatgatctt-agctttatctaaaaaaatcggggatgatggaagagcagttgaagtgatagaaggatgca |
27563504 |
T |
|
| Q |
585 |
gctcttaaagctgta |
599 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
27563505 |
gctcttgaagttgta |
27563519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 360
Target Start/End: Original strand, 27563153 - 27563291
Alignment:
| Q |
220 |
tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc |
319 |
Q |
| |
|
|||||||||||||| |||| | |||| ||||||||||| | ||||||||||| |||| ||||| |||||||| || ||||| |||||||||||| | |
|
|
| T |
27563153 |
tttaggctggcagggctaacatctcaaaatgggagaaggaactgaatttgaaattggagtctgctgataatgcaaggcgtatccttgacaattctga--c |
27563250 |
T |
|
| Q |
320 |
tatgactgatgagctcaagattcagttgcaaaagtgtatta |
360 |
Q |
| |
|
|||||| |||| ||| || |||||||||| || ||||||| |
|
|
| T |
27563251 |
tatgaccgatggcctcgagcttcagttgcagaaatgtatta |
27563291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 212 - 736
Target Start/End: Complemental strand, 29411410 - 29410876
Alignment:
| Q |
212 |
aatgcaactttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaat |
311 |
Q |
| |
|
||||||| |||||||||||||| ||||| | |||| ||||||||||| || || |||||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
29411410 |
aatgcaattttaggctggcagggttaacgtctcaaaacgggagaaggagttgaagttgaaattggagtctgctgttaatgcaaggcatatccatgacaat |
29411311 |
T |
|
| Q |
312 |
tctgactctatgactgatgagctcaagattcagttgcaaaagtgtatta--------aatgatgttgaaatcaaggtggaagaggccaaagaggatactg |
403 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| ||||| |||||||||| |||||| ||||||| | | |||||||||||||| ||||||||| |
|
|
| T |
29411310 |
tctgactctaggattgatgagctcaagcttcaattgcagaagtgtattattgaaaagaatgatcttgaaattacgatggaagaggccaaacaggatactg |
29411211 |
T |
|
| Q |
404 |
gtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaatgatatcaaa |
503 |
Q |
| |
|
||||| || ||| ||||||||||||| ||||||| |||||||||||||||| |||| ||||||||| | ||||| ||||||||||||| || |||||| |
|
|
| T |
29411210 |
gtctgcgtagcacattttctctatttatatttgcactgtgtatgtttggatcccctcgtttcttacactgttaaatttttcagggagaaaagacatcaaa |
29411111 |
T |
|
| Q |
504 |
gctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcat |
603 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
29411110 |
gccgagtttcgtgtgatggcttcagctttatctaaagaaatggggatgatggacgcgcaggtgaagcgatggaaagatgcagctcttgaagctgtatcat |
29411011 |
T |
|
| Q |
604 |
tgcgtgagaaagcacattcattcagcg--aaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtct |
701 |
Q |
| |
|
| ||||||||||| |||||| | || | ||||||| ||| |||||||||| || ||| | ||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
29411010 |
tacgtgagaaagcgcattcactaagagaaaaattgagtggaaaggttattcgcataaagtaccctttcattttctttctcgcctactttgtgataagtct |
29410911 |
T |
|
| Q |
702 |
tgtacagaaatttatctaaataatttgagtctgtg |
736 |
Q |
| |
|
| |||||||||| |||| ||||||||||| |||| |
|
|
| T |
29410910 |
tttacagaaattcatcttgataatttgagtttgtg |
29410876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 29411682 - 29411503
Alignment:
| Q |
2 |
tcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgtttatttccagaatgaactaaatgatgataa |
101 |
Q |
| |
|
|||||||||||||||||| ||| | |||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29411682 |
tcattatttcttgagtaattgaaacacattcattatagggttccatgtaaaagtatcttttc----gtgtttatttccagaatgaactaaatgatgataa |
29411587 |
T |
|
| Q |
102 |
-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatcgctgaattggatagatataaatcatt |
184 |
Q |
| |
|
||||||| || |||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
29411586 |
gtatgtacgcaattcccgagtatactctttggcaaatgatcaacttcaacactggattgctgaattggacagatataaatcatt |
29411503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 419 - 735
Target Start/End: Original strand, 24202401 - 24202719
Alignment:
| Q |
419 |
tttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtg |
518 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
24202401 |
tttctctatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggacaaaagatatcaaagttgagtttcgtgtt |
24202500 |
T |
|
| Q |
519 |
atatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcac |
618 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||| |||| ||| | |||||||||||||||| |
|
|
| T |
24202501 |
atggcttcaactttatctaaagaaatgggaatgatggatgcacagttgaagcgatgagaagatgcagcacttgaagccgtatccttgcgtgagaaagcac |
24202600 |
T |
|
| Q |
619 |
attcatt--cagcgaaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttat |
716 |
Q |
| |
|
||||| | ||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||| |
|
|
| T |
24202601 |
attcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttgtcaccgactttgtgataggtcttttacagcaatttat |
24202700 |
T |
|
| Q |
717 |
ctaaataatttgagtctgt |
735 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
24202701 |
ctagataatttgagtctgt |
24202719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26928694 - 26928621
Alignment:
| Q |
1 |
gtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgttta |
74 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||| |||| |||||| |
|
|
| T |
26928694 |
gtcattatttcttgagtaatttagatgcatatactctagggttccatgtaaaagtatatttttatgtgtgttta |
26928621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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