View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_23 (Length: 403)
Name: NF19097_low_23
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 1352907 - 1353283
Alignment:
| Q |
1 |
ttaaccgtaagctgaatgtcatgaatatctatataagggacaagagacccaagaattccaagagttgtccattgactaaaccagaaggatgaagacccag |
100 |
Q |
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| T |
1352907 |
ttaaccgtaagctgaatgtcatgaatatctatataaggaacaagagacccaagaattccaagagttgtccattgactaaaccaaaaggatgaagacccag |
1353006 |
T |
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| Q |
101 |
actcagcacgccagacatatcatgctttaagaacatttttagctttgatgatggaggacgaagtgggagagccgttggggctatcagttgcttgagagga |
200 |
Q |
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| T |
1353007 |
actcagcacgccagacatatcatgctttaagaacatttttagctttgatgatggaggacgaagtgggagagccgttggggctatcagttgcttgagagga |
1353106 |
T |
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| Q |
201 |
gattaacccaaagttggccagaagattgaatcatgtccaacactagctttcctaaaaggcaagtattcgcctccctagctgatctgattccaaggccacc |
300 |
Q |
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| T |
1353107 |
g-----------gtttgccagaagattgaatcacgtccaacactagctttcctaaaaggcaagtattcgcctccctagctgatctgattccaaggccacc |
1353195 |
T |
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| Q |
301 |
aagagatttaggacgggaaatctttttccaacctactaaatgaatgcttttatcatttgtacttctctaaatgaaatttctagttgtt |
388 |
Q |
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| T |
1353196 |
aagagatttaggacgagaaatctttttccaacctactaaatgaatgcttttatcatttgtacttctctaaatgaaatttctagttgtt |
1353283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 25122168 - 25122262
Alignment:
| Q |
4 |
accgtaagctgaatgtcatgaatatctata--taagggacaagagacccaagaattccaagagttgtccattgactaaaccagaaggatgaagacc |
97 |
Q |
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| T |
25122168 |
accgtaagct-aatgtcatgaatatctatatataagggacaagggacccaagaatgccaagagtcgtccattggctaaaccagaaggatgaagacc |
25122262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 388
Target Start/End: Complemental strand, 21376461 - 21376319
Alignment:
| Q |
245 |
agctttcctaaaaggcaagtattcgcctccctagctgatctgattccaaggccaccaagagatttaggacgggaaatctttttccaacctactaaatgaa |
344 |
Q |
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| T |
21376461 |
agctttccaagaaggcaagtattcaattccctggctctcctgattcaaaggccaccaagagtcatgggacgggtagt-tttttccaacctaccagatgaa |
21376363 |
T |
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| Q |
345 |
tgcttttatcatttgtacttctctaaatgaaatttctagttgtt |
388 |
Q |
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| T |
21376362 |
tgcctttatcatttgaacctttccagatgaaattcctggttgtt |
21376319 |
T |
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