View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19097_low_24 (Length: 402)

Name: NF19097_low_24
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19097_low_24
NF19097_low_24
[»] chr4 (11 HSPs)
chr4 (12-402)||(1513647-1514038)
chr4 (12-402)||(1489604-1489995)
chr4 (127-367)||(1508281-1508521)
chr4 (213-325)||(1530103-1530215)
chr4 (291-402)||(1538010-1538121)
chr4 (12-116)||(12121805-12121907)
chr4 (247-402)||(558197-558354)
chr4 (295-402)||(12121700-12121807)
chr4 (213-364)||(1517780-1517931)
chr4 (236-374)||(1496190-1496328)
chr4 (180-252)||(55909321-55909392)
[»] chr2 (2 HSPs)
chr2 (175-402)||(44575738-44575972)
chr2 (92-124)||(44576001-44576033)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Complemental strand, 1514038 - 1513647
Alignment:
Q  12 atggaaaactcataaaagtgagagcagagaaaactgtgctacaaaagtatgcaaaaccnnnnnnn-tgctactgatgaggcaaagtgatgaaaaacaata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| ||||||||||||||||||||||||||    
T  1514038 atggaaaactcataaaagtgagagcagagaaaactgtgctacaaaagtatgcaaaaccaaaaaaaatgctactaatgaggcaaagtgatgaaaaacaata 1513939  T
Q  111 caatttgaaactgcaagtaatatcatactcaaccgcttgctttacttagggaaatatcattcaaaaatcgataagtaaatacacattttcaagttgacat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1513938 caatttgaaactgcaagtaatatcatactcaaccgcttgctttacttagggaaatatcatgcaaaaatcgataagtaaatacacattttcaagttgacat 1513839  T
Q  211 ttaaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1513838 ttaaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaa 1513739  T
Q  311 acaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttga 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1513738 acaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttga 1513647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Complemental strand, 1489995 - 1489604
Alignment:
Q  12 atggaaaactcataaaagtgagagcagagaaaactgtgctacaaaagtatgcaaaaccnnnnnnn-tgctactgatgaggcaaagtgatgaaaaacaata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| ||||||||||||||||||||||||||    
T  1489995 atggaaaactcataaaagtgagagcagagaaaactgtgctacaaaagtatgcaaaaccaaaaaaaatgctactaatgaggcaaagtgatgaaaaacaata 1489896  T
Q  111 caatttgaaactgcaagtaatatcatactcaaccgcttgctttacttagggaaatatcattcaaaaatcgataagtaaatacacattttcaagttgacat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1489895 caatttgaaactgcaagtaatatcatactcaaccgcttgctttacttagggaaatatcatgcaaaaatcgataagtaaatacacattttcaagttgacat 1489796  T
Q  211 ttaaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489795 ttaaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaa 1489696  T
Q  311 acaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttga 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||    
T  1489695 acaatgcatccttgaagtgataagagctccatctctctgtcgctgaattgataatcatatggagttgataactttcttaacgatggccttga 1489604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 127 - 367
Target Start/End: Complemental strand, 1508521 - 1508281
Alignment:
Q  127 gtaatatcatactcaaccgcttgctttacttagggaaatatcattcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaat 226  Q
    ||||||| | |||||||||||||| ||||||| ||||||||||| |||||| |||| |||||||||| |||| |||||||||||||||||| ||||||||    
T  1508521 gtaatataacactcaaccgcttgccttacttaaggaaatatcatgcaaaaaccgatgagtaaatacatatttgcaagttgacatttaaaaatagagcaat 1508422  T
Q  227 atctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaa 326  Q
    || |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  1508421 atttcatagaactaaatttcaaaacaaaaacatcttacattcaaaagttcaaactacaagaaagcacttttagaatactagcaaacaatgcatccttgac 1508322  T
Q  327 gtgataagagctccatctctctgtcgctgaaatgataacca 367  Q
    |||||||| | ||||||||||| ||||||||| ||||||||    
T  1508321 gtgataagtgttccatctctctatcgctgaaacgataacca 1508281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 1530215 - 1530103
Alignment:
Q  213 aaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaac 312  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||| ||||    
T  1530215 aaaaacagagaaatatctcatagaagtaaatttgaaaacaaaaacatcttacatgcaagagttcaaactacaagaaatcacttttagaatactaggaaac 1530116  T
Q  313 aatgcatccttga 325  Q
    |||||||||||||    
T  1530115 aatgcatccttga 1530103  T

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Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 1538121 - 1538010
Alignment:
Q  291 cacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaa 390  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||| |  ||||||||||||    
T  1538121 cactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaa 1538022  T
Q  391 cgatggccttga 402  Q
    ||||||||||||    
T  1538021 cgatggccttga 1538010  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 12121907 - 12121805
Alignment:
Q  12 atggaaaactcataaaagtgagagcagagaaaactgtgctacaaaagtatgcaaaaccnnnnnnntgctactgatgaggcaaagtgatgaaaaacaatac 111  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||    
T  12121907 atggaaaactca--aaagtgagagcagagaaaactatgctacaaaagtatgcaaaacaaaatagatgctactaatgaggcaaagtgatgaaaaacaatac 12121810  T
Q  112 aattt 116  Q
    |||||    
T  12121809 aattt 12121805  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 402
Target Start/End: Original strand, 558197 - 558354
Alignment:
Q  247 aaaacaaaaacatcttacattaaaaa--gttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatct 344  Q
    |||||||||||||| |||||| || |  ||||||||||||  ||  |||||||||| ||||||||  |||||||||||| | |  |||||||||||||||    
T  558197 aaaacaaaaacatcctacatttaagatcgttcaaactacagcaatgcacttttagattactagcagccaatgcatcctttacgcaataagagctccatct 558296  T
Q  345 ctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttga 402  Q
    |||||||||||||| || ||  |||||||| |  ||||||||| || ||||| |||||    
T  558297 ctctgtcgctgaaacgacaaggatatggagttgttaactttctcaatgatggtcttga 558354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 402
Target Start/End: Complemental strand, 12121807 - 12121700
Alignment:
Q  295 tttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgat 394  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||||||  ||| | ||||| |||||| || ||||| |   |||||||| || |||    
T  12121807 tttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatctggagttgtaaactttctcaatgat 12121708  T
Q  395 ggccttga 402  Q
    ||||||||    
T  12121707 ggccttga 12121700  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 364
Target Start/End: Complemental strand, 1517931 - 1517780
Alignment:
Q  213 aaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaac 312  Q
    ||||||| || | |||||||||||| ||||||  ||||||||||||||||| ||| || |||||||||  ||   || || |||||||||||||| ||||    
T  1517931 aaaaacaaagtagtatctcatagaaataaattcgaaaacaaaaacatcttaaatttaatagttcaaacatcagtgaagcatttttagaatactagtaaac 1517832  T
Q  313 aatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataa 364  Q
    | | ||||||||  |  |||| || ||||||||  ||||||||||| |||||    
T  1517831 attacatccttggcgcaataaaagttccatctccttgtcgctgaaacgataa 1517780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 374
Target Start/End: Complemental strand, 1496328 - 1496190
Alignment:
Q  236 aagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataaga 335  Q
    |||||||||| |||||| |||||||||||||| || |||||||||  ||   || || ||||||| |||||| ||||| | ||||||||  |  ||||||    
T  1496328 aagtaaatttgaaaacagaaacatcttacatttaagagttcaaacatcagtgaagcatttttagattactagtaaacattacatccttggcgcaataaga 1496229  T
Q  336 gctccatctctctgtcgctgaaatgataaccatatggag 374  Q
    | ||||||||  ||||| ||||  |||||| || |||||    
T  1496228 gttccatctccttgtcgttgaatggataacgatgtggag 1496190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 55909392 - 55909321
Alignment:
Q  180 gataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaaca 252  Q
    |||||||||||||||||||  ||||||||||||||| | | || ||| |||| ||||||||||| | ||||||    
T  55909392 gataagtaaatacacatttgtaagttgacatttaaaga-aaagtaatttctcttagaagtaaatcttaaaaca 55909321  T

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Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 175 - 402
Target Start/End: Complemental strand, 44575972 - 44575738
Alignment:
Q  175 aaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaa-acaaaaacatcttacattaaaaag 273  Q
    |||| ||| |||||||| ||||||  ||||| |||||||||| || || |||||||||||||||||||||||||  | |||||||||||||||| || ||    
T  44575972 aaattgatgagtaaataaacatttgtaagtttacatttaaaa-caaagtaatatctcatagaagtaaatttaaagtaaaaaaacatcttacatttaagag 44575874  T
Q  274 ttcaaactacaagaaatcacttttagaatactagcaaacaatgcatcc-------ttgaagtgataagagctccatctctctgtcgctgaaatgataacc 366  Q
    ||||||||||||  || || |||| |||||||||||||||||||||||       |||| | |||||||| |||||||||  ||| ||||||| || ||     
T  44575873 ttcaaactacaatgaagcaattttcgaatactagcaaacaatgcatcccttgacgttgacgcgataagagttccatctcttggtcactgaaatcatcacg 44575774  T
Q  367 atatggaggttataactttcttaacgatggccttga 402  Q
    |||||||  |  ||||||||| || |||||||||||    
T  44575773 atatggaattgttaactttctcaatgatggccttga 44575738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 44576033 - 44576001
Alignment:
Q  92 aaagtgatgaaaaacaatacaatttgaaactgc 124  Q
    ||||||||||||| |||||||||||||||||||    
T  44576033 aaagtgatgaaaagcaatacaatttgaaactgc 44576001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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