View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_25 (Length: 402)
Name: NF19097_low_25
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 155 - 395
Target Start/End: Complemental strand, 4963756 - 4963512
Alignment:
| Q |
155 |
acttgagggaacttgcttcggtgtggagcctggataccttcacaacacttctatcaaaatatacccagacatcatcccgactgcccggtaatcttaactt |
254 |
Q |
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| T |
4963756 |
acttgagggaacttgcttcggcgtggagcctggataccttcacaacacttctatcaaaatatacccagacatcatcccgactgcccggtaatcttaactt |
4963657 |
T |
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| Q |
255 |
gatcatttttacaatgagattttttaagtcg----ttaaagttttgcctttggctaagaaaattgagtttgtaaatgtttttaacgatttaatttaaagc |
350 |
Q |
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| T |
4963656 |
gatcatttttacaatgggattttttaagtcgttaattaaagttttgcctttggctaagaaaattgagtttgaaaatgtttttaacgatttaatttaaagc |
4963557 |
T |
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| Q |
351 |
gcatgaaaatatctaccttgagttgtccttactgatgaatctgtg |
395 |
Q |
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| T |
4963556 |
gcatgaaaatatctaccttgagttgtcctggctgatgaatctgtg |
4963512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 4963864 - 4963756
Alignment:
| Q |
22 |
ttagtgtttctgtaagttcttagatcattaagttattat----ctgttaattttggcatgttgatctcaagtttcttactgtgatttcctttgcattatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | | ||||||||||||| |
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| T |
4963864 |
ttagtgtttctgtaagttcttagatcattaagttattaattagctgttaattttggcatgttgctctcaagtttcttactgttaatccctttgcattatg |
4963765 |
T |
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| Q |
118 |
aattagaaa |
126 |
Q |
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| T |
4963764 |
aattagaaa |
4963756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 8302316 - 8302475
Alignment:
| Q |
85 |
caagtttcttactgtgatttcctttgcattatgaattagaaagtcgaaaacataatgagtgtaattagtgacttgagggaacttgcttcggtgtggagcc |
184 |
Q |
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||||||||||||| | |||||||| |||| || || ||||||| ||||||| | |||||||| |||| |||||||||||||||||||| | | ||||| |
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| T |
8302316 |
caagtttcttactctaatttccttgacattctgtatcagaaagttgaaaacagagtgagtgtacttagcgacttgagggaacttgcttcagcggagagcc |
8302415 |
T |
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| Q |
185 |
tggataccttcacaacacttctatcaaaatatacccagacatcatcccgactgcccggtaa |
245 |
Q |
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| T |
8302416 |
tggatacctttac-actcatctatacaaatatactcgaacatcaacctgactgcccggtaa |
8302475 |
T |
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