View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_29 (Length: 389)
Name: NF19097_low_29
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_29 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 27987154 - 27987536
Alignment:
| Q |
7 |
tatattattctgttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcc |
106 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27987154 |
tatattatcctggtaatttatctattttagggcattattctaatttatccttttccgagtttcagacatgtcattcaattgcgttttgagtatcaatgcc |
27987253 |
T |
|
| Q |
107 |
tacttaaggcaagacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaattgtaccatacaaacat |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27987254 |
tacttaaggcaagacacgtttttccagtaaaaaattattgtcacggatataggcaagcgaaggacagaggtttgagatttaaattgtaccatacaaacat |
27987353 |
T |
|
| Q |
207 |
ttggtgttcaaaaaagcacgtaagatatagtttattcaattatcgatgtcatacactaataatgtgtaatctgatatttatcctgtgtttttatttttca |
306 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27987354 |
ttggtgttcaaaaaagcacggaagatatagtttattcaattatcgttgtcatacactaataatgtgtaatttgatatttatcctgtgtttttatttttca |
27987453 |
T |
|
| Q |
307 |
gatgtgagcaagacctttgttgagttaccttctgaactttgttctataatcatgtcaccaatatcagtcagaactctttattc |
389 |
Q |
| |
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||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27987454 |
gatgtgagcaagacctttgttaacttaccttatgaactttgttctataatcatgtcaccaatatcagtcagaactctttattc |
27987536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 27997509 - 27997127
Alignment:
| Q |
7 |
tatattattctgttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcc |
106 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
27997509 |
tatattatccggttaatttatctattttagggcattattctaaattatccttttccgagtttcagacatggcattcaatttcattttgagcatcaatgcc |
27997410 |
T |
|
| Q |
107 |
tacttaaggcaagacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaattgtaccatacaaacat |
206 |
Q |
| |
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||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27997409 |
tacttaaagaaagacacatttttccagtaaaaaattattgtcacggatataggcaagcaaaggacagaggtttgagctttaaattgtaccatacaaacat |
27997310 |
T |
|
| Q |
207 |
ttggtgttcaaaaaagcacgtaagatatagtttattcaattatcgatgtcatacactaataatgtgtaatctgatatttatcctgtgtttttatttttca |
306 |
Q |
| |
|
|| ||||||| |||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||| || |||| ||| ||||||||| ||| ||| |
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| T |
27997309 |
ttagtgttcataaaagcacataagatatagtttattcaattattgttgtcaaacactaataatgtgtaatatggtattaatcatgtgtttttctttgtca |
27997210 |
T |
|
| Q |
307 |
gatgtgagcaagacctttgttgagttaccttctgaactttgttctataatcatgtcaccaatatcagtcagaactctttattc |
389 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27997209 |
gatgtgagcaagacctttgtagagttaccttctgaactttgttctataatcatgtcatcaatatcagtcagaactctttattc |
27997127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 64 - 389
Target Start/End: Original strand, 27996604 - 27996928
Alignment:
| Q |
64 |
agtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggcaagacacgtttttccagtaaaaaattattgtcacgaatataggcaag |
163 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
27996604 |
agtttcagacatgacattcaattgcgttttgagcatcaatgcctacttaaggcaagacatgtttttccagcaaaaaattattgtcacgaatataggcaag |
27996703 |
T |
|
| Q |
164 |
cgaaggacagaggtttgagatttaaattgtaccatacaaacatttggtgttcaaaaaagcacgtaagatatagtttattcaattatcgatgtcatacact |
263 |
Q |
| |
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|||| || ||||||||||| |||||||||||| | ||||| |||||||||| | |||| | || |||||||||||||||||||||||| ||||| ||||| |
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| T |
27996704 |
cgaaagatagaggtttgagctttaaattgtacaacacaaaaatttggtgttaataaaa-cgcgaaagatatagtttattcaattatcgctgtcaaacact |
27996802 |
T |
|
| Q |
264 |
aataatgtgtaatctgatatttatcctgtgtttttatttttcagatgtgagcaagacctttgttgagttaccttctgaactttgttctataatcatgtca |
363 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
27996803 |
aataatgtgtaatctgatattaatcatgtgtttttctttttcagatgtgagcatggcctttgttgagttacctcctgaactttgctctataatcatgtca |
27996902 |
T |
|
| Q |
364 |
ccaatatcagtcagaactctttattc |
389 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
27996903 |
ccaatatcagtcagaactctttattc |
27996928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 27988120 - 27987741
Alignment:
| Q |
7 |
tatattattctgttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcc |
106 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| || |
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|
| T |
27988120 |
tatattatccggttaatttatctattttagggcatt---ctaatttatcctttttcgagtttctgacatggcattcaattgcgttttgagcatcaattcc |
27988024 |
T |
|
| Q |
107 |
tacttaaggcaagacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaattgtaccatacaaacat |
206 |
Q |
| |
|
||| |||||| |||||||||||| ||||||||||||||| ||| | ||||| ||||||||| || ||||||||||| ||||||||||||| ||||||||| |
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| T |
27988023 |
tacataaggcgagacacgtttttacagtaaaaaattattttcatggatataagcaagcgaatgatagaggtttgagctttaaattgtaccgtacaaacat |
27987924 |
T |
|
| Q |
207 |
ttggtgttcaaaaaagcacgtaagatatagtttattcaattatcgatgtcatacactaataatgtgtaatctgatatttatcctgtgtttttatttttca |
306 |
Q |
| |
|
|||||||||| |||| || | |||||||||||||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||||||||||| ||||||| |
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|
| T |
27987923 |
ttggtgttcataaaatcaagaaagatatagtttattcaattatcgttgtcaaacattcataatctgtaatctgatattaatcctgtgtttttctttttca |
27987824 |
T |
|
| Q |
307 |
gatgtgagcaagacctttgttgagttaccttctgaactttgttctataatcatgtcaccaatatcagtcagaactctttattc |
389 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||| ||||| ||||||||| |
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|
| T |
27987823 |
gatgtgagtaagacctttgttgagttacctcctgaactttgctctataatcatgttactaatatcaatcagatatctttattc |
27987741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 26459887 - 26460060
Alignment:
| Q |
18 |
gttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
26459887 |
gttaatttatctattttagggcattattctaatttatccttttccgagtttcagacatggcattcaattgcgttttgagcatcaacgcctacttaaggca |
26459986 |
T |
|
| Q |
118 |
agacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaatt |
191 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
26459987 |
agacatgtttttccagtaaaaaattattgtcacggatataggcaagcgaaggacagaggtttgagctttaaatt |
26460060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 194 - 386
Target Start/End: Original strand, 26460104 - 26460296
Alignment:
| Q |
194 |
accatacaaacatttggtgttcaaaaaagcacgtaagatatagtttattcaattatcgatgtcatacactaataatgtgtaatctgatatttatcctgtg |
293 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | |||||||||||| ||||||||| | ||||| | |||||||||||||||||||||||| |||||||| |
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|
| T |
26460104 |
accatacaaacatttggtgttcataaaagcatggaagatatagtttcttcaattattgctgtcaaatactaataatgtgtaatctgatattaatcctgtg |
26460203 |
T |
|
| Q |
294 |
tttttatttttcagatgtgagcaagacctttgttgagttaccttctgaactttgttctataatcatgtcaccaatatcagtcagaactcttta |
386 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
26460204 |
tttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtccgaactattta |
26460296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 29678670 - 29678843
Alignment:
| Q |
18 |
gttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
29678670 |
gttaatttatctattttagggcattattctaatttatccttttccgagtttcagacatggcattcaattgcgttttgagcatcaacgcctacttaaggca |
29678769 |
T |
|
| Q |
118 |
agacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaatt |
191 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29678770 |
agacatgtttttccagtaaaaaattattgtcacggatataggcaagcgaaggacagaggtttgagctttaaatt |
29678843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 194 - 387
Target Start/End: Original strand, 29678887 - 29679080
Alignment:
| Q |
194 |
accatacaaacatttggtgttcaaaaaagcacgtaagatatagtttattcaattatcgatgtcatacactaataatgtgtaatctgatatttatcctgtg |
293 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | |||||||||||| ||||||||| | ||||| | |||||||||||||||||||||||| |||||||| |
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| T |
29678887 |
accatacaaacatttggtgttcataaaagcatggaagatatagtttcttcaattattgctgtcaaatactaataatgtgtaatctgatattaatcctgtg |
29678986 |
T |
|
| Q |
294 |
tttttatttttcagatgtgagcaagacctttgttgagttaccttctgaactttgttctataatcatgtcaccaatatcagtcagaactctttat |
387 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
29678987 |
tttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcaaaactctttat |
29679080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 11490764 - 11490580
Alignment:
| Q |
7 |
tatattattctgttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcc |
106 |
Q |
| |
|
|||||||| | || |||||||||||||| | |||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||| |
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|
| T |
11490764 |
tatattatccggtcaatttatctattttggtgcattattttaatttatccttttctgagtttcaggcatggcattcaattgcgttttgaacatcaacgcc |
11490665 |
T |
|
| Q |
107 |
tacttaaggcaagacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaatt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||| ||| |||| |
|
|
| T |
11490664 |
tacttaaggcaagacacgtttttccagtaaaaaattattgtcatggatatagtcaagcgaaagacagaggtttgagctttgaatt |
11490580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 11490485 - 11490380
Alignment:
| Q |
261 |
actaataatgtgtaatctgatatttatcctgtgtttttatttttcagatgtgagcaagacctttgttgagttaccttctgaactttgttctataatcatg |
360 |
Q |
| |
|
|||| |||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||| |
|
|
| T |
11490485 |
actattaatgtgtaatctgatcttaatcccgtgtttttctttttcagatgtgagcaagacctttgttgaattacctcctgaactctgctctataatcatg |
11490386 |
T |
|
| Q |
361 |
tcacca |
366 |
Q |
| |
|
|||||| |
|
|
| T |
11490385 |
tcacca |
11490380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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