View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19097_low_3 (Length: 682)

Name: NF19097_low_3
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19097_low_3
NF19097_low_3
[»] chr4 (1 HSPs)
chr4 (18-662)||(10599794-10600438)


Alignment Details
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 18 - 662
Target Start/End: Original strand, 10599794 - 10600438
Alignment:
Q  18 tcatcattataaccatattgagctaacctagtaatcatcaaagtccacgtaacaacattcttctcacgcattttatcaaacaccttatgtgcagactcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  10599794 tcatcattataaccatattgagctaacctagtaatcatcaaagtccacgtaacaacattcttctcacgcattttatcaaacaccttacgtgcagactcta 10599893  T
Q  118 aatctgctaaactaccacctttaacaaacatatcaatcaattcacaaccaacacaaacatgcgaatcaaaataccccgtcttcaaaacaaatccaaacaa 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10599894 aatctgctaaactacaacctttaacaaacatatcaatcaattcacaaccaacacaaacatgcgaatcaaaataccccgtcttcaaaacaaatccaaacaa 10599993  T
Q  218 acacaacccagttttaaaaaacccacctttcaaacaagcccgtatcacagcagtaaaacaatactcatttggataaaccccgtcttgtaaaagcaactga 317  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10599994 acacaacccagttttaaaaaacccgcctttcaaacacgcccgtatcacagcagtaaaacaatactcattcggataaaccccgtcttgtaaaagcaactga 10600093  T
Q  318 tcaaacatctcaactgctttcaagcaattttgattgtttgcaaagcaagaaatgattgaactatatgaaacaacatcgcgtttggaattttccatggatt 417  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10600094 tcaaacatctcaactgctttcaagcaatttcgattgtttgcaaagcaagaaatgattgaactatatgaaacaacatcgcgtttggaattttccatggatt 10600193  T
Q  418 ggaaaatggaaaaagcggttatagggtcgtttgatttggagtagagggtaatgagggagttcaagaggagggtgtcgagggggagatttgaggtggtgag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10600194 ggaaaatggaaaaagcggttatagggtcgtttgatttggagtagagggtaatgagggagttcaagaggagggtgtcgagggggagatttgaggtggtgag 10600293  T
Q  518 tttgtgatgaaggagtttgccgaggtgggtgtttttggttcggatgcattgtttaaggagaagagaagaggttatgagtttgttgttatgggttgattct 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10600294 tttgtgatgaaggagtttgccgaggtgggtgtttttggttcggatgcattgtttaaggagaagtgaagaggttatgagtttgttgttatgggttgattct 10600393  T
Q  618 gtgtctgttaggtttaaggttgtaatggctttgtgaagttgttgt 662  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  10600394 gtgtctgttaggtttaaggttgtaatggctttgtggagttgttgt 10600438  T

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