View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_31 (Length: 377)
Name: NF19097_low_31
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 21 - 362
Target Start/End: Complemental strand, 7946928 - 7946571
Alignment:
| Q |
21 |
ggcctcttgttctttctctatcatttcttgtatgaaaagcccttcctctgccattgccagaactgcgcacaaaatatgaataagcataaaattttcaact |
120 |
Q |
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| T |
7946928 |
ggcctcttgttctttctctatcatttcttgtatcaaaagcccttcccctgctattgccagaactgcgcacaaaatatgaatacgcataaaattttcaact |
7946829 |
T |
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| Q |
121 |
tga-tatgtaatggaagctactcgtacatagtattgaatttcctcaataaagtaatgaaatcctttgaaattcagaaattttttcacaagaatt------ |
213 |
Q |
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| T |
7946828 |
tgactatgtaatggaagctactcatacatagtattgaatttcctcaataaagtaatgaaatcctttgaaattcagaaattttttcacaagaattgatttt |
7946729 |
T |
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| Q |
214 |
---------gattcagactaaaagtagtatttgtgtttggatacattcattaaatcataaattaattaccttgaaggagtagcgcgattgttgtccattg |
304 |
Q |
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| T |
7946728 |
gagtgaattgattcagactaaaagtagtatttgtgtttggatacattcattaaatcataaattaattaccttgaaggagtggcgcgattgttgtccattg |
7946629 |
T |
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| Q |
305 |
gagttggaggtggaacagaggcaaagaatctgagaagaagagatacacgtggcggaag |
362 |
Q |
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| T |
7946628 |
gagttggaggtggaacagaggcaaagaatctgagaagaagagagacacgtggcggaag |
7946571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 32999175 - 32999104
Alignment:
| Q |
23 |
cctcttgttctttctctatcatttcttgtatgaaaagcccttcctctgccattgccagaactgcgcacaaaa |
94 |
Q |
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| T |
32999175 |
cctcttgttctttctctatcatttcttgtatcaaaagccattcctctgccattgccagaactgcccacaaaa |
32999104 |
T |
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