View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_33 (Length: 369)
Name: NF19097_low_33
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 10148560 - 10148681
Alignment:
| Q |
233 |
tttacatcaattttcttgatgagttaaagtgttt-attaaagcaattatgtatcctttcaaatgaaaatgagtagaatttgataccatataaataatttg |
331 |
Q |
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| T |
10148560 |
tttacatcaattttcttgatgagttaaagtgttttattaaagcaattatgtatcctttcaaatgaaaatgagtagaatttgataccatataaataatttg |
10148659 |
T |
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| Q |
332 |
aattgatttgcacgatcataat |
353 |
Q |
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| T |
10148660 |
aattgatttgcacgatcataat |
10148681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 10148360 - 10148574
Alignment:
| Q |
9 |
gattatactcacaccaaaagactgacgtata----taaagaagcatcaatgcatcatatagttnnnnnnnnnnnntgatgaataagaagcagcatatagn |
104 |
Q |
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| T |
10148360 |
gattatactcacaccaaaagactgacgtatacatataaagaagcatcaatgcatgatatagttaaaaaaaaa---tgatgaataagaagcagcatatagt |
10148456 |
T |
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| Q |
105 |
nnnnnnnn----acgggaaagaagcatcatatagnnnnnnnnnnnnnctttggcataaataatggatggataaaattgaaatttcattggagaagttagg |
200 |
Q |
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| T |
10148457 |
ttttttttttttacgggaaagaagcatcatatagttgttacttttttctttggcataaataatggatggataaaattgaaatttcattggaaaagttagg |
10148556 |
T |
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| Q |
201 |
agatttacatcaattttc |
218 |
Q |
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| T |
10148557 |
agatttacatcaattttc |
10148574 |
T |
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