View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_35 (Length: 346)
Name: NF19097_low_35
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 116248 - 116579
Alignment:
| Q |
1 |
ttcatgaacatatttatcatata--tatttaagtcagcataaatattaaactatgcgtgtgttgtgggccacatttaggtgatacacattggtctatgtt |
98 |
Q |
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| T |
116248 |
ttcatgaacatatttatcatatacatatttaagtcaacataaatattaaactatgcgtgtgttgtggcccacatttaggtgatacacattggtctatgtt |
116347 |
T |
|
| Q |
99 |
tttagactattaataataattgattagttaaactaacaagctcgtgggtaggtaggtgtgtttcatgattgaattaggttagtttattccnnnnnnngga |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |
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| T |
116348 |
tttagactattaataataattgattagttaaactaacaagctcgtgggtaggtaggtgtctttcatgattgaattaggttagtttattccaaaaaaagaa |
116447 |
T |
|
| Q |
199 |
aaacatcctatccaatttcttttagttttgttgttcggctattgcattgccattggtttgattgaaaataaacatagtgcatatttgattttgctcaaat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116448 |
aaacatcctatccaatttcttttagttttgttgttcggctattgcattgccattggtttgattgaaaataaacatagtgcatatttgattttgctcaaat |
116547 |
T |
|
| Q |
299 |
aaatattgattttactcaaatgtgacataggt |
330 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
116548 |
aaatattgattttactcaaatgtgacataggt |
116579 |
T |
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