View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_37 (Length: 338)
Name: NF19097_low_37
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 4970380 - 4970698
Alignment:
| Q |
1 |
ctattgagctttagcttaatttatgcctcacgttctaatgttggacttaacagtgtctcttccttaaacaaggtttgtttctctctcaattttcatatac |
100 |
Q |
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| T |
4970380 |
ctattgagctttagcttaatttatgcctcacgtcctaatgttggacttaacagtgtctcttccttaaacaaggtttgtttctctctcaattttcatatac |
4970479 |
T |
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| Q |
101 |
ttatttcatgcatggttttataaaatttcattttatgttggtgaggcatgaaaaaacccaaatactttatttcatgcatggtatggtagtgtttattctt |
200 |
Q |
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| T |
4970480 |
ttatttcatgcatggttttataaaatttcattttatgttggtgaggcatgaaaaaacccaaatactttatttcatgc-----atggtagtgtttattctt |
4970574 |
T |
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| Q |
201 |
ttgttcactttat-atttgattgggattttgagaattttcttgtttcaattgaaggatgtttcggctaccaatgcatctagtgaagatgagagttgtgaa |
299 |
Q |
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| T |
4970575 |
ttgttcactttataatttgactgggattttgagaattttcttgtttcaattgaaggatgtttcggctaccaatgcatctagtgaagatgagagttgtgaa |
4970674 |
T |
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| Q |
300 |
ggattggaaggagaacaagaatgt |
323 |
Q |
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| T |
4970675 |
ggattggaaggagaacaggaatgt |
4970698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 5035124 - 5035165
Alignment:
| Q |
282 |
gaagatgagagttgtgaaggattggaaggagaacaagaatgt |
323 |
Q |
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| T |
5035124 |
gaagatgagaattgtgaaggagtggaaggagaacaagaatgt |
5035165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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