View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19097_low_4 (Length: 574)
Name: NF19097_low_4
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 17 - 565
Target Start/End: Original strand, 11588378 - 11588926
Alignment:
| Q |
17 |
ttaataaataaaaccattgacgagcttaatgcagagttggaccgtattggcaggcctatagctgtggattcaggggtcagaacttagaccattgttgaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11588378 |
ttaataaataaaaccattgacgagcttaatgcagagttggaccgtattggcaggcctatagctgtggattcaggggtcagaacttagaccattgttgaaa |
11588477 |
T |
|
| Q |
117 |
tcaatcttctaagatttgaaactacttgatttctgaagtctaagtagcgtcgnnnnnnnnncttaggcccaactatacactattttagagatgtgtcgag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11588478 |
tcaatcttctaagatttgaaactacttgatttctgaagtctaagtagcgtcatttttttttcttaggcccaactatacactattttagagatgtgtcgag |
11588577 |
T |
|
| Q |
217 |
cattcgacaaagtatttaaggaacacatcgatggagggtaagtgcatttcttgagtttcagaattagctgctaactgtagttgacgaattttatatagct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11588578 |
cattcgacaaagtatttaaggaacacatcgatggagggtaagtgcatttcttgagtttcagaattagctgctaactgtagttgacaaattttatatagct |
11588677 |
T |
|
| Q |
317 |
tcccttttatttaacgccaattcccatgtgatagagtaacatacaatatgctatctagctatgataacccatgtttcttgataatctgcttcatatgcat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11588678 |
tcccttttatttaacgccaattcccatgtgatagagtaacatagaatatgctatctagctatgataacccatgtttcttgataatctggttcatatgcat |
11588777 |
T |
|
| Q |
417 |
atatgcaatcttcaactggaatttctctcatacattctgctggtatattgnnnnnnngtgtgctttcttaaactcttttctattggatgccttttttaaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11588778 |
atatgcaatcttcaactggaatttctctcatacattctgctggtatattgtttttttgtgtgctttcttaaactcttttctattggatgccttttttaaa |
11588877 |
T |
|
| Q |
517 |
gttttacttgcagtctcgtagtaattccccttttcactattagtattat |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11588878 |
gttttacttgcagtctcgtagtaattcccctttttactattagtattat |
11588926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 44533743 - 44533822
Alignment:
| Q |
181 |
aggcccaactatacactattttagagatgtgtcgagcattcgacaaagtatttaaggaacacatcgatggagggtaagtg |
260 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||| || ||||||||||| || ||| | ||||||||||||||| |
|
|
| T |
44533743 |
aggcccaactatacaccattttagaaatgtgtcgtgcatttgataaagtatttaaagagcacctggatggagggtaagtg |
44533822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 44533575 - 44533656
Alignment:
| Q |
17 |
ttaataaataaaaccattgacgagcttaatgcagagttggaccgtattggcaggcctatagctgtggattcaggggtcagaa |
98 |
Q |
| |
|
|||||||| || || ||||| ||||||||||||||||| ||||| ||||||||||| || || |||||||| |||||||||| |
|
|
| T |
44533575 |
ttaataaacaagacaattgatgagcttaatgcagagttagaccgcattggcaggccgattgcagtggattccggggtcagaa |
44533656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University