View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19097_low_47 (Length: 294)

Name: NF19097_low_47
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19097_low_47
NF19097_low_47
[»] chr7 (1 HSPs)
chr7 (1-278)||(19808800-19809077)
[»] chr2 (30 HSPs)
chr2 (1-278)||(39138540-39138820)
chr2 (1-278)||(39152953-39153236)
chr2 (1-278)||(39472769-39473058)
chr2 (7-278)||(39380499-39380776)
chr2 (104-278)||(39216657-39216834)
chr2 (1-278)||(39396657-39396940)
chr2 (101-278)||(39196515-39196695)
chr2 (101-278)||(44624779-44624959)
chr2 (102-278)||(39371115-39371294)
chr2 (101-276)||(44895114-44895292)
chr2 (101-278)||(39205747-39205927)
chr2 (103-278)||(39387499-39387677)
chr2 (97-278)||(39421191-39421372)
chr2 (108-278)||(39223715-39223888)
chr2 (1-193)||(39604210-39604405)
chr2 (2-235)||(39188802-39189041)
chr2 (154-278)||(39413034-39413161)
chr2 (1-193)||(39493532-39493727)
chr2 (100-278)||(39099583-39099764)
chr2 (100-193)||(39126482-39126575)
chr2 (160-264)||(39478313-39478420)
chr2 (119-193)||(39425626-39425700)
chr2 (1-187)||(39144490-39144679)
chr2 (101-278)||(44615403-44615586)
chr2 (101-193)||(2362676-2362768)
chr2 (3-50)||(39425772-39425819)
chr2 (1-79)||(39216551-39216629)
chr2 (1-43)||(44615300-44615342)
chr2 (2-51)||(39099482-39099531)
chr2 (1-49)||(44624673-44624721)
[»] chr5 (2 HSPs)
chr5 (108-278)||(33562293-33562466)
chr5 (97-278)||(17060639-17060823)
[»] chr8 (2 HSPs)
chr8 (105-278)||(45342966-45343142)
chr8 (145-278)||(44730156-44730292)
[»] chr6 (1 HSPs)
chr6 (4-268)||(16114264-16114534)
[»] chr3 (1 HSPs)
chr3 (100-278)||(51575981-51576162)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 19808800 - 19809077
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgttattgatggtagcagtgtctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  19808800 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccacgatgtaacgagggagaccatgctgttattgatggtagcagtgtctt 19808899  T
Q  101 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19808900 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaaagt 19808999  T
Q  201 actgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19809000 actgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgcttacttattttgatgaagat 19809077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 39138540 - 39138820
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagcagtgt 97  Q
    ||||||||||| ||||||||||||||||||||||||| || |||||||||||| |||||||  | ||||| ||||||||   |||||||| | || |  |    
T  39138540 catcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaatggagaacatgctgtgattattgatgatggctgcat 39138639  T
Q  98 ctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||||    
T  39138640 ctttctgctagaacaactgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacatgaaa 39138739  T
Q  198 agtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    | |||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  39138740 aatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattttgatgaagat 39138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 39152953 - 39153236
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgttatt---gatggtagcagtgt 97  Q
    ||||||||||| ||||| |||| |||||||||||||| ||||||||||||||| ||| |||  | |||||||||||||| |||   ||||||||| |  |    
T  39152953 catcagatccagcaaaaattgtgttggatataatacagaacccaattattccacggtataagaacggagaccatgctgtgattatagatggtagctgcat 39153052  T
Q  98 ctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga-- 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||| ||||||||||||||| || |      
T  39153053 ctttctgctagaacaactgatgagaatctcaccgaagattaaaccttgtgtaagagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaa 39153152  T
Q  196 -aaagtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
     ||| ||||||||||||| ||||||||||||||||||||||| ||||||   |||||| |||| |||||| ||| ||| |||||    
T  39153153 gaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatggattggttacttctttcgataaagat 39153236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 39473058 - 39472769
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagcagtgt 97  Q
    ||||||||||| ||||| ||||| ||||||||||||  ||||| ||||||||| |||||||  ||||||||||||||||   ||||||||||||||   |    
T  39473058 catcagatccagcaaaatttgttctggatataatactgaacccgattattccacggtgtaagaagggagaccatgctgtgattattgatggtagcaacat 39472959  T
Q  98 ctttctgctagaacaactgatgagaatctcaccg------aagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaac 191  Q
    ||||||| | ||||| ||||||| ||||||||||      |||||||  ||| |||||| | ||||  |||||||||| |||||||||||||||| ||||    
T  39472958 ctttctgttggaacagctgatgaaaatctcaccgtcactgaagattagcccttgtgtaaaaaaagacgcattgaagctcgcacttgatttgaaagttaac 39472859  T
Q  192 atgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    ||||||   | ||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  39472858 atgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagat 39472769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 39380776 - 39380499
Alignment:
Q  7 atccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgttattg---atggtagcagtgtctttct 103  Q
    ||||| ||||||||||||| ||||||||||| || || |||| ||||  ||| ||  |||||||| ||||||| |||    ||| |||| |  |||||||    
T  39380776 atccagcaaaagttgttttagatataatacataaaccgattaatccactgtgcaagaagggagacaatgctgtgattttttatgatagccgcatctttct 39380677  T
Q  104 gctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aaagt 200  Q
    ||||||||||||||||||| |||||||||| ||| ||  | |||||||||||||| || ||| |||||||||||||||||||||| |||| |   | | |    
T  39380676 gctagaacaactgatgagagtctcaccgaatattgaagattgtgtaagagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaat 39380577  T
Q  201 actgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    |||||| ||||| ||| ||||||||| |||||||||||||||| | |||||| ||||||||||| ||| |||||||||    
T  39380576 actgaagattctgtggcggttcttggatttctactgcttttgtcaatttatggattgcttacttctttcgatgaagat 39380499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 104 - 278
Target Start/End: Original strand, 39216657 - 39216834
Alignment:
Q  104 gctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aaagt 200  Q
    ||||||||||||||||| |||||||||  | ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||   ||| |    
T  39216657 gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat 39216756  T
Q  201 actgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    ||| |||||||| |||||||||| |||||||| |||||||||| | |||||| |||| |||||| ||||| |||||||    
T  39216757 actaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatggattggttacttcttttggtgaagat 39216834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 39396940 - 39396657
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagcagtgt 97  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| |||||||||  ||||||  |||||||| ||| |||   |||||| | ||||    |    
T  39396940 catcagatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaagaagggagacaatggtgtggttattgaggatagccacat 39396841  T
Q  98 ctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga-- 195  Q
    ||   |||||||| ||||||||||||||||||| |  |||| |||| |||||||||||||| || |||||||||||| |||||||| |||| |||| |      
T  39396840 ctacgtgctagaagaactgatgagaatctcaccaactattagaccttgtgtaagagaagaagcactgaagctagcacatgatttgagagcttacattaga 39396741  T
Q  196 -aaagtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
     ||| ||||||||||||| ||| ||||||||||||| |  ||||||||| | |||||| ||||||||||| ||| |||||||||    
T  39396740 gaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatggattgcttacttctttcgatgaagat 39396657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 278
Target Start/End: Complemental strand, 39196695 - 39196515
Alignment:
Q  101 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa--- 197  Q
    |||||| |||||||||||||||||||||||  | ||||||||| |||| ||| ||||| |||||||||||||| ||||||||||||||||||||||        
T  39196695 tctgctggaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaatgac 39196596  T
Q  198 agtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    | ||||||||||||| ||| ||||||||| ||||| |||||||||| | ||||| ||||||||  || |||||||||||||    
T  39196595 aatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttataaattgcttgattcttttgatgaagat 39196515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 278
Target Start/End: Original strand, 44624779 - 44624959
Alignment:
Q  101 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aa 197  Q
    |||||||||| ||||||||| ||||||||| || ||||||||| |||||||||| ||| ||||||||||||| | ||| ||||||||||||||||   ||    
T  44624779 tctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaa 44624878  T
Q  198 agtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    | ||||||||||| | ||| |||||| || |||||| || ||||||   |||||| ||||| |||||||||||||||||||    
T  44624879 aatactgaaaattatttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagat 44624959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 102 - 278
Target Start/End: Original strand, 39371115 - 39371294
Alignment:
Q  102 ctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa---a 198  Q
    |||||||||||||| |||| ||||||||| || ||| | ||| |||||||||| ||| |||||||||||||||||||| ||||||| |||||||||   |    
T  39371115 ctgctagaacaacttatgaaaatctcaccaaatattgagccttgtgtaagagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaa 39371214  T
Q  199 gtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
     || | ||||| || |||||||||||||||||||| ||||||||| |  ||||| |||| |||||| |||||||||||||    
T  39371215 atagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaattatggattggttacttcttttgatgaagat 39371294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 276
Target Start/End: Complemental strand, 44895292 - 44895114
Alignment:
Q  101 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaaag- 199  Q
    ||||||||||  ||||||| |||| ||||| |  ||||||||| ||||||||||| || ||||||||||||||| | | || ||||||||||| ||| |     
T  44895292 tctgctagaaacactgatgggaatgtcaccaattattaaacctcgtgtaagagaacaagcattgaagctagcacataaattcaaagctaacataaaagga 44895193  T
Q  200 --tactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaag 276  Q
      ||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||| |||||| ||| |||||||    
T  44895192 aatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatggattgattacttctttcgatgaag 44895114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 101 - 278
Target Start/End: Complemental strand, 39205927 - 39205747
Alignment:
Q  101 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa--- 197  Q
    |||||| |||||||||||||||||||||||    ||| ||||| |||| |||||| || |||||||||||||| |||| ||||||||||| ||||||       
T  39205927 tctgcttgaacaactgatgagaatctcaccagttattgaaccttgtgtgagagaaaaagcattgaagctagcatttgacttgaaagctaagatgaaagaa 39205828  T
Q  198 agtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    | ||||||||||||| ||| ||||||||||||||||||||||||||   ||||| ||||||||  || ||||||| |||||    
T  39205827 aatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataaattgcttgattcttttgataaagat 39205747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 278
Target Start/End: Complemental strand, 39387677 - 39387499
Alignment:
Q  103 tgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aaag 199  Q
    ||||||||||||||||||||| |||||| || ||| || || |||||| | ||||| ||||||||||||| | |||||| |||||||||||||   |||     
T  39387677 tgctagaacaactgatgagaacctcaccaaaaattgaaacttgtgtaaaaaaagaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaa 39387578  T
Q  200 tactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    ||||||||||||| |||  |||||||||||||| |||||||||| | ||||||   |||||  ||||||||| ||||||    
T  39387577 tactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatgggctgcttgattattttgacgaagat 39387499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 39421372 - 39421191
Alignment:
Q  97 tctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatg-- 194  Q
    |||||||||||||||||||||||| |||||||||  | |||||| || |||||| ||||||| |||||||||| || ||||||||||||||||| |||      
T  39421372 tctttctgctagaacaactgatgaaaatctcaccacatattaaaacttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaatatgga 39421273  T
Q  195 -aaaagtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
      ||| ||||||||||  |    ||||||| ||||||||||||||||||| | ||||  ||||| ||||||||||  ||||||||    
T  39421272 agaaaatactgaaaataat---ttggttctcggttttctactgcttttgtcaatttaccaattggttacttatttcaatgaagat 39421191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 39223715 - 39223888
Alignment:
Q  108 gaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa---agtactg 204  Q
    |||||||||||||||||||||||  | ||| ||||| |||  |||||| || ||||||||||||||  |||||| ||||  |||||||||   | |||||    
T  39223715 gaacaactgatgagaatctcaccagatattgaaccttgtgagagagaaaaagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactg 39223814  T
Q  205 aaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    |||| ||| ||| ||||||||||||||| |||||||||| | ||||| ||||||||  ||  ||||||||||||    
T  39223815 aaaaatctttggcggttcttggttttctgctgcttttgtcaatttataaattgcttgattcatttgatgaagat 39223888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 39604210 - 39604405
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagcagtgt 97  Q
    ||||||||||| ||||||||||||||||||||||||| || || ||||||| |  || |||   ||||||| |||||||   |||||||| |||     |    
T  39604210 catcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattgatgatagagacat 39604309  T
Q  98 ctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 193  Q
      |||||||  |||||||||||||||||  |||  | ||||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||    
T  39604310 tcttctgctcaaacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaatgaagctagcacttaatttgaaatctaacat 39604405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 39189041 - 39188802
Alignment:
Q  2 atcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagcagtgtc 98  Q
    |||||||||  ||||||||||||||||||||||||| ||||| ||||||| |  |||| |   ||||||| ||| ||   ||||||||| ||||    |     
T  39189041 atcagatccttcaaaagttgttttggatataatacagaaccccattattcaaaagtgtgagatgggagacaatgttgtaattattgatgatagccacatt 39188942  T
Q  99 tttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga--- 195  Q
     |||||||   |  ||||||||||||||||||  | |||||||||  ||||||||| ||  || |||| |||||||||||||| |||||||||||||       
T  39188941 cttctgctcatagtactgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaag 39188842  T
Q  196 aaagtactgaaaattctctggtggttcttggttttctact 235  Q
    ||| || || ||||||| ||||||||||||||||||||||    
T  39188841 aaaataatggaaattctttggtggttcttggttttctact 39188802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 278
Target Start/End: Complemental strand, 39413161 - 39413034
Alignment:
Q  154 aagaaacattgaagctagcacttgatttgaaagctaacatga---aaagtactgaaaattctctggtggttcttggttttctactgcttttgtaagttta 250  Q
    ||||| |||||||||||||||||||||||||||||||| |||   ||| ||| ||||| ||| ||| ||||||| |||||||  ||||||||| |||||     
T  39413161 aagaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttg 39413062  T
Q  251 tgaattgcttacttattttgatgaagat 278  Q
    || |||| |||||| ||| |||||||||    
T  39413061 tggattggttacttttttggatgaagat 39413034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 39493727 - 39493532
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagcagtgt 97  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| ||||||  |  ||||||    |||||| ||||||   ||||||||| ||||    |    
T  39493727 catcagatccatcaaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgatgctgcaattattgatgatagccacat 39493628  T
Q  98 ctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 193  Q
      ||||||| ||| |||||| || |||||||||  | |||| ||||  ||||| ||||||| || ||||||||||||||||| |||||||||||||    
T  39493627 tcttctgctcgaagaactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacat 39493532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 278
Target Start/End: Original strand, 39099583 - 39099764
Alignment:
Q  100 ttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---a 196  Q
    ||||||| |||||||||||||||||||||||  | || |||||| |||||||||||||| |  ||||||| |||||| | |||||| ||   || |   |    
T  39099583 ttctgctcgaacaactgatgagaatctcaccacatatcaaaccttgtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtga 39099682  T
Q  197 aagtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    || ||||||||||||  ||| |||||||||||||||||| ||| ||| | ||||| |||||  | ||| |||||||||||||    
T  39099683 aactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagat 39099764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 39126482 - 39126575
Alignment:
Q  100 ttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 193  Q
    ||||||| ||||||||||||||||||||||  || ||| ||||| |||||||||||||| || |||||||||| ||| | |||||| |||||||    
T  39126482 ttctgctcgaacaactgatgagaatctcactaaatattgaacctcgtgtaagagaagaagcaatgaagctagctcttaaattgaaatctaacat 39126575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 39478420 - 39478313
Alignment:
Q  160 cattgaagctagcacttgatttgaaagctaacatga---aaagtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaatt 256  Q
    ||||||||||||||| ||||||||||||| |||| |   ||| |||||||||||||  ||  ||||||| ||||||||||||||||| | |||||| |||    
T  39478420 cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt 39478321  T
Q  257 gcttactt 264  Q
    ||||||||    
T  39478320 gcttactt 39478313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 39425700 - 39425626
Alignment:
Q  119 gagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 193  Q
    ||||||||||||| | |||| ||||| ||||| ||||||| || ||||| |||||||||||||||||||||||||    
T  39425700 gagaatctcaccggatattagacctgatgtaaaagaagaagcaatgaagttagcacttgatttgaaagctaacat 39425626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 39144490 - 39144679
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagcagtgt 97  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| ||||||  |  ||||||    |||||| ||||||   ||||||||| ||||    |    
T  39144490 catcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccacat 39144589  T
Q  98 ctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagc 187  Q
      |||||||  |  |||||| || ||||||||   | |||||||||  ||||| ||||||| || |||||||||||||||||||||||||    
T  39144590 tcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaagctagcacttgatttgaaagc 39144679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 278
Target Start/End: Original strand, 44615403 - 44615586
Alignment:
Q  101 tctgctagaacaactgatgagaatctcaccgaagatta---aacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga-- 195  Q
    |||||||||||||||||||| ||||||||| || ||||   || || |||||||||| ||| | |||||||||||   ||| ||||||||||||||||      
T  44615403 tctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaa 44615502  T
Q  196 -aaagtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
     ||| ||| ||||||||| ||| || |||||| |||||| || |||| |   |||| | |||| ||| ||| ||||||||||||    
T  44615503 gaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaagat 44615586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 2362676 - 2362768
Alignment:
Q  101 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 193  Q
    |||||| |||||||||||||||||||||||  |  ||||||||  |||  |||||||| || |||||||||||||| |  |||||||| ||||    
T  2362676 tctgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcgagaagaagcaatgaagctagcacttaaactgaaagcttacat 2362768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 39425819 - 39425772
Alignment:
Q  3 tcagatccaacaaaagttgttttggatataatacaaaacccaattatt 50  Q
    ||||||||| |||||||||||||||| |||||||| ||||| ||||||    
T  39425819 tcagatccatcaaaagttgttttggaaataatacagaaccctattatt 39425772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39216551 - 39216629
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt 79  Q
    ||||||||||| ||| | ||||||||||||| ||||| ||||| | ||||| || ||||||  |||||||| |||||||    
T  39216551 catcagatccatcaagacttgttttggatatgatacagaaccctactattcaattgtgtaagaagggagacaatgctgt 39216629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44615300 - 44615342
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaaccc 43  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||    
T  44615300 catcagatccagcaaaacttgttttggatataatactaaaccc 44615342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 39099482 - 39099531
Alignment:
Q  2 atcagatccaacaaaagttgttttggatataatacaaaacccaattattc 51  Q
    |||||||||| ||||||| ||||||||||||||||| || || |||||||    
T  39099482 atcagatccatcaaaagtcgttttggatataatacagaatcccattattc 39099531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44624673 - 44624721
Alignment:
Q  1 catcagatccaacaaaagttgttttggatataatacaaaacccaattat 49  Q
    ||||||||||| ||||| ||||||||||||||||||  ||||| |||||    
T  44624673 catcagatccagcaaaaattgttttggatataatactgaaccccattat 44624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 33562293 - 33562466
Alignment:
Q  108 gaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aaagtactg 204  Q
    |||||||||||||||||||||||  | ||| ||||| |||| ||| ||||| |||||||||||||| |||||||||||||||||||||   ||| |||||    
T  33562293 gaacaactgatgagaatctcaccagatattgaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactg 33562392  T
Q  205 aaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    ||  || | ||| |||||||||||||||  ||||||||| | ||||| ||||||||  || |||||||||||||    
T  33562393 aattttttttggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagat 33562466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 17060639 - 17060823
Alignment:
Q  97 tctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaa 196  Q
    ||||| |||||||||||||||||| ||| ||||| || |||||| || |||||| ||| ||| | ||||||||||||| ||| |||||||||||||| ||    
T  17060639 tctttatgctagaacaactgatgataatgtcaccaaatattaaatcttgtgtaaaagacgaagctttgaagctagcacatgagttgaaagctaacataaa 17060738  T
Q  197 ---aagtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
       || ||||||| ||||  ||| |||||| || |||||  || | ||||  ||||||| |||| |||||||||||||| |||||    
T  17060739 agcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatggattgtttacttattttgatcaagat 17060823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 105 - 278
Target Start/End: Original strand, 45342966 - 45343142
Alignment:
Q  105 ctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaa---aagta 201  Q
    ||||||||||||||||||||||  || |  ||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||| ||||   || ||    
T  45342966 ctagaacaactgatgagaatcttgccaagtattaaaccttgtgtaagagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaata 45343065  T
Q  202 ctgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    ||||||| ||  ||   |||||||||||||||||| |||||| | || ||| ||||||||||| ||||||| |||||    
T  45343066 ctgaaaaatcattgaacgttcttggttttctactgattttgtcaattcatgtattgcttacttcttttgataaagat 45343142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 278
Target Start/End: Original strand, 44730156 - 44730292
Alignment:
Q  145 gtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aaagtactgaaaattctctggtggttcttggttttctactgctttt 241  Q
    |||||||||| ||| | ||||||||||||| ||| |||||||||||||| |   ||| |||||||||||||  || |||||| || |||||| || ||||    
T  44730156 gtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgatttt 44730255  T
Q  242 gtaagtttatgaattgcttacttattttgatgaagat 278  Q
    |    |||||  |||||||||||| ||||||| ||||    
T  44730256 gacgatttatagattgcttacttactttgatggagat 44730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 16114264 - 16114534
Alignment:
Q  4 cagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagcagtgtctt 100  Q
    |||||||| ||| | ||||||||||||||||||| |||||   || ||||  ||||||  |||||||| |||||||   ||||||||   ||    |||     
T  16114264 cagatccatcaagacttgttttggatataatacagaaccccggtactccactgtgtaagaagggagacaatgctgtgattattgatgaatgccacatcta 16114363  T
Q  101 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aa 197  Q
    |||| ||||| ||||||||||||| ||||| |  ||||||||| ||||||||||| || ||||||||||||| |  |||||||||||| ||||||   |     
T  16114364 tctgttagaagaactgatgagaatatcaccaactattaaacctcgtgtaagagaaaaagcattgaagctagcgcgcgatttgaaagcttacatgagagag 16114463  T
Q  198 agtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattt 268  Q
    | |||| |||||||   ||  ||| |||||||| | |||||||||| |||||||| |||||| ||||||||    
T  16114464 aatactaaaaattcatcggctgttgttggttttatgctgcttttgtcagtttatggattgctaacttattt 16114534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 278
Target Start/End: Original strand, 51575981 - 51576162
Alignment:
Q  100 ttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---a 196  Q
    ||||||| |||||||| ||||||||||||||  | || ||||||  ||||  ||||||| ||||||| ||||  ||  ||||||||||  |||| |   |    
T  51575981 ttctgcttgaacaactaatgagaatctcaccacatatcaaacctcatgtacaagaagaagcattgaaactagtcctcaatttgaaagcgtacattagtga 51576080  T
Q  197 aagtactgaaaattctctggtggttcttggttttctactgcttttgtaagtttatgaattgcttacttattttgatgaagat 278  Q
    || ||||||||||||  ||||||||||||||| ||| || ||| ||| | |||||| |||| || ||||||||||| |||||    
T  51576081 aaatactgaaaattccgtggtggttcttggttatctgctccttctgtcaatttatggattggttccttattttgataaagat 51576162  T

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