View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19097_low_5 (Length: 567)

Name: NF19097_low_5
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19097_low_5
NF19097_low_5
[»] chr3 (8 HSPs)
chr3 (19-558)||(24646035-24646574)
chr3 (414-555)||(24633181-24633322)
chr3 (58-142)||(24684200-24684284)
chr3 (58-142)||(24655967-24656051)
chr3 (83-139)||(18158148-18158204)
chr3 (412-471)||(24658983-24659042)
chr3 (323-360)||(24671775-24671812)
chr3 (83-111)||(24720226-24720254)
[»] chr7 (1 HSPs)
chr7 (83-139)||(22014230-22014286)
[»] chr5 (1 HSPs)
chr5 (83-139)||(15282536-15282592)
[»] chr2 (1 HSPs)
chr2 (83-139)||(24224034-24224090)


Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Complemental strand, 24646574 - 24646035
Alignment:
Q  19 gtcattcttctgatatattgaataatatgattctgttatattactttctctaaacatgtattgcaattctgttttgttttccttattaattgaccagaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646574 gtcattcttctgatatattgaataatatgattctgttatattactttctctaaacatgtattgcaattctgttttgttttccttattaattgaccagaat 24646475  T
Q  119 tctgtttatgtttcaacagtttatatatggaaaattgtctggttatctttatttttattttagagtttgagtgagcctaacctgtagtagagtgatataa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646474 tctgtttatgtttcaacagtttatatatggaaaattgtctggttatctttatttttattttagagtttgagtgagcctaacctgtagtagagtgatataa 24646375  T
Q  219 tataatgatgaattgtatataccagatcacatccactgcaagattctcaaacaattactaatttatgatcattgtgattttttgttgctagtcttatagt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646374 tataatgatgaattgtatataccagatcacatccactgcaagattctcaaacaattactaatttatgatcattgtgattttttgttgctagtcttatagt 24646275  T
Q  319 ttgggaatttattgggaagacgatgaagttgatcacagatgatccatgtttaatatatccccttcctatgcaagaacacaatttgcaaattttaagtttc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646274 ttgggaatttattgggaagacgatgaagttgatcacagatgatccatgtttaatatatccccttcctatgcaagaacacaatttgcaaattttaagtttc 24646175  T
Q  419 aaagccacttgaataagttaggttgtcattagtgttcatttaaactgttttttgaaacgcatcctttctacaaagcatgtgtcaattgaccatgctttgg 518  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646174 aaagccacttgaatgagttaggttgtcattagtgttcatttaaactgttttttgaaacgcatcctttctacaaagcatgtgtcaattgaccatgctttgg 24646075  T
Q  519 tggagcagactaatatgtgatggttgagtttgagtattat 558  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24646074 tggagcagactaatatgtgatggttgagtttgagtattat 24646035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 414 - 555
Target Start/End: Complemental strand, 24633322 - 24633181
Alignment:
Q  414 gtttcaaagccacttgaataagttaggttgtcattagtgttcatttaaactgttttttgaaacgcatcctttctacaaagcatgtgtcaattgaccatgc 513  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| |||| |    
T  24633322 gtttcagagccacttgaataagttaggttgtcatttgtgttcatttaaactgttttttgaaacacatcctttctactaagcatatgtcaattggccatac 24633223  T
Q  514 tttggtggagcagactaatatgtgatggttgagtttgagtat 555  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  24633222 tttggtggagcagaataatatgtgatgcttgagtttgagtat 24633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 24684284 - 24684200
Alignment:
Q  58 attactttctctaaacatgtattgcaattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtttat 142  Q
    |||||||||||||| ||||||  ||||||||| ||||||||||||||||||||| |||||| |||| |||||||||| |||||||    
T  24684284 attactttctctaagcatgtaaagcaattctgctttgttttccttattaattgagcagaatgctgtgtatgtttcaatagtttat 24684200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 24656051 - 24655967
Alignment:
Q  58 attactttctctaaacatgtattgcaattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtttat 142  Q
    |||||||||| ||| ||||||  ||||||||| ||||||||||||||||||||| |||||   ||| |||||||||| |||||||    
T  24656051 attactttctttaagcatgtaaagcaattctgctttgttttccttattaattgagcagaacgatgtgtatgtttcaatagtttat 24655967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 18158148 - 18158204
Alignment:
Q  83 aattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtt 139  Q
    ||||||||||||||||||||||||||||| ||||||  ||| |||||||||| ||||    
T  18158148 aattctgttttgttttccttattaattgagcagaataatgtatatgtttcaatagtt 18158204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 471
Target Start/End: Complemental strand, 24659042 - 24658983
Alignment:
Q  412 aagtttcaaagccacttgaataagttaggttgtcattagtgttcatttaaactgtttttt 471  Q
    ||||| ||||||||||||  | | ||||||||||||||||||||| ||||||||||||||    
T  24659042 aagttccaaagccacttgtcttaattaggttgtcattagtgttcaattaaactgtttttt 24658983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 24671812 - 24671775
Alignment:
Q  323 gaatttattgggaagacgatgaagttgatcacagatga 360  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  24671812 gaatttattgggaagaggatggagttgatcacagatga 24671775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 24720254 - 24720226
Alignment:
Q  83 aattctgttttgttttccttattaattga 111  Q
    |||||||||||||||||||||||||||||    
T  24720254 aattctgttttgttttccttattaattga 24720226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 22014230 - 22014286
Alignment:
Q  83 aattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtt 139  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||||||||| ||||    
T  22014230 aattctgttttgttttccttattaattgagcagaatactgtatatgtttcaatagtt 22014286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 15282536 - 15282592
Alignment:
Q  83 aattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtt 139  Q
    ||||||||||||||||||||||||||||| ||||||  ||| |||||||||| ||||    
T  15282536 aattctgttttgttttccttattaattgagcagaataatgtatatgtttcaatagtt 15282592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 24224034 - 24224090
Alignment:
Q  83 aattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtt 139  Q
    ||||||||||||||||||||||||||||| ||||||  ||| |||||||||| ||||    
T  24224034 aattctgttttgttttccttattaattgagcagaataatgtatatgtttcaatagtt 24224090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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