View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_54 (Length: 272)
Name: NF19097_low_54
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_54 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 3361198 - 3361465
Alignment:
| Q |
1 |
aagcactgaacttcatgtaattaaagccaaaccttgccatgagaatcttgccgatgatcttcaagtaaagccttcattatttcatgaagtgtctcagcag |
100 |
Q |
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| T |
3361198 |
aagcactgaacttcatgtaa----agccaaaccttgccatgtgaatcttgccgatgatcttcaagtaaagccttcattatttcatgaagtgtctcagcag |
3361293 |
T |
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| Q |
101 |
gtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcagcgtcaagttggtcgattcttttggtcaaagc |
200 |
Q |
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| T |
3361294 |
gtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgaccgcagcgtcaagttggtcgattcttttggtcaaagc |
3361393 |
T |
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| Q |
201 |
actacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatcatt |
272 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3361394 |
actacaacaaatttcaggccagttttcatgctcaatacaggccaaatcattctcaaggcacaagagatcatt |
3361465 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 258
Target Start/End: Original strand, 35907360 - 35907548
Alignment:
| Q |
70 |
gccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcag |
169 |
Q |
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||||||| ||||||||||||| ||||||| ||| ||||| |||||| | ||||| | || ||| ||| | |||| ||||||| |||||| | || ||| |
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| T |
35907360 |
gccttcactatttcatgaagtctctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaa |
35907459 |
T |
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| Q |
170 |
cgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaagg |
258 |
Q |
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| T |
35907460 |
catcaagctggttgattttttctgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagg |
35907548 |
T |
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