View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_55 (Length: 270)
Name: NF19097_low_55
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 6866592 - 6866338
Alignment:
| Q |
1 |
agtctcagactatttctccctctttattttgttttcagagttgtgatactttagtagatcataatggaagctgcaagtattgcatcaaccggaatagttc |
100 |
Q |
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| T |
6866592 |
agtctcagactatttctccctctttattttgttttcagagttgtgatactttagtagatcataatggaagctgcaagtattgcatcaaccggaatagttc |
6866493 |
T |
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| Q |
101 |
ttgaagttcttacaagagaaaattacttggattggagtgcacttgtgaagaattacttgatcggcaaagatctatgggacgacatagttgagggtaatct |
200 |
Q |
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| T |
6866492 |
ttgaagttcttacaagagaaaattacttggattggagtgcacttgtgaagaattacttgatcggcaaagatctatgggacgacatagttgagggtaatct |
6866393 |
T |
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| Q |
201 |
cgatgctcgacattcggattggaaatcaaaaaatggtcaagctttacatgctatt |
255 |
Q |
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| T |
6866392 |
cgatgctcaacattcggattggaaatcaaaaaatggtcaagctttacatgctatt |
6866338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 6133866 - 6133767
Alignment:
| Q |
56 |
agatcataatggaagctgcaagtattgcatcaaccggaatagttcttgaagttcttacaagagaaaattacttggattggagtgcacttgtgaagaatta |
155 |
Q |
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| T |
6133866 |
agatcttaatggcagctgcaaatattgcatcaaccggaatagttcttgaagttctaacaagagataattacttagattggagtgtgctggtgaagaatta |
6133767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 6087788 - 6087879
Alignment:
| Q |
64 |
atggaagctgcaagtattgcatcaaccggaatagttcttgaagttcttacaagagaaaattacttggattggagtgcacttgtgaagaatta |
155 |
Q |
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| T |
6087788 |
atggcagctgcaaatattgcatcaactggaatagttcttgaagttctaacaagagataattacttagattggagtgtgctggtgaagaatta |
6087879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 6133660 - 6133622
Alignment:
| Q |
217 |
gattggaaatcaaaaaatggtcaagctttacatgctatt |
255 |
Q |
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| T |
6133660 |
gattggaaatcaaaaaatggtcaagctttacatgctatt |
6133622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 6087986 - 6088024
Alignment:
| Q |
217 |
gattggaaatcaaaaaatggtcaagctttacatgctatt |
255 |
Q |
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| T |
6087986 |
gattggaaatcaaaaaatggtcaagccttacatgctatt |
6088024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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