View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_57 (Length: 266)
Name: NF19097_low_57
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 2789863 - 2789619
Alignment:
| Q |
10 |
ataatactgcagtttctgccatttcactctcatctcatatgccaaaggaaaattaactgtgaatgttgcgaaggaaaattaagattaaaaagtcaaagga |
109 |
Q |
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| T |
2789863 |
ataatactgcagtttctgccatttcagtctcatctcatatgccaaaggaaaactaactgtgaatgttgcgaagaaaaattaagattaaaaagtcaaagga |
2789764 |
T |
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| Q |
110 |
aggaatgccattgttttttgttatcagcctacaaatgtgatgtgtttagttttatcaagttggtgtatacagacca----tattttattatttagtaatt |
205 |
Q |
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| T |
2789763 |
aggaatgccattgttttttgttatcagcctacaaatgtgatgtgtttagttttatcaagttggtgtatacagaccaaacccattttattattcagtaatt |
2789664 |
T |
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| Q |
206 |
tgacaactgaatgttatcatgcatgttttattttatgctattgtt |
250 |
Q |
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| T |
2789663 |
tgacaactgaatgttatcacgcatgttttattttatgctattgtt |
2789619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 2796802 - 2796631
Alignment:
| Q |
63 |
taactgtgaatgttgcgaaggaaaattaagattaaaaagtcaaaggaaggaatgccattgttttttgttatcagcctacaaatgtgatgtgtttagtttt |
162 |
Q |
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| T |
2796802 |
taactgtgaattttgcgaaggaaaattaagcttcaaaagtcaatggaaggaatgccattattat---ttattggcctatggatgtgat-ttattagtttt |
2796707 |
T |
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| Q |
163 |
atcaagttggtgtatacagaccatattttattatttagtaatttgacaactgaatgttatcatgcatgttttatttt |
239 |
Q |
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| T |
2796706 |
atcaacttggtggatacagacca-ggtttattattctgtaatttgacagatgaatgtgatcatgtatgttttctttt |
2796631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 2748500 - 2748464
Alignment:
| Q |
13 |
atactgcagtttctgccatttcactctcatctcatat |
49 |
Q |
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| T |
2748500 |
atactgcagtttctgccatttcactctcatctcatat |
2748464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 2796866 - 2796827
Alignment:
| Q |
10 |
ataatactgcagtttctgccatttcactctcatctcatat |
49 |
Q |
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| T |
2796866 |
ataatactgaagtttctgccatttcactctcatctcatat |
2796827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 2806766 - 2806732
Alignment:
| Q |
10 |
ataatactgcagtttctgccatttcactctcatct |
44 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2806766 |
ataatactgcagtttctgccatttcactctcatct |
2806732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 2856445 - 2856482
Alignment:
| Q |
12 |
aatactgcagtttctgccatttcactctcatctcatat |
49 |
Q |
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|||||||||||||||||||||| |||||||| |||||| |
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| T |
2856445 |
aatactgcagtttctgccatttaactctcatatcatat |
2856482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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